Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq56 257 2e-63 seq1 105 8e-18 >seq56 Length=135535 Score = 257 bits (284), Expect = 2e-63 Identities = 906/1396 (65%), Gaps = 37/1396 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| | |||||||| || |||||||| || || ||||||| || Sbjct 119247 CCTCAGCACATGATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATTGAACGCGTT 119188 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 |||||||| ||| || |||||| |||| | | ||| ||||| |||| || |||| Sbjct 119187 TTGGAGACCTACCACCTCATGTCCAGCAAGCTCT--TCACCCACGCCTCACCTACACTCT 119130 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| |||||||| || | || |||| || ||||| ||| || ||||| | Sbjct 119129 TCAACGCTGGTACCCCCCAATGTCAGCTGTCTTCCTGTTTCCTAGTCGACATGAAGGACG 119070 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || || |||||||||| | ||||| | | ||||| ||||| ||| ||||| Sbjct 119069 ACAGCATTGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTG 119010 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | ||||| || || || |||| | | || | ||| ||| || || | Sbjct 119009 GTGGTATCGGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTACATTGCCGGCACCA 118950 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | ||| ||| | || || ||||| ||||||||||| || ||| ||| || | || | Sbjct 118949 ACGGTACATCCAACGGCATCATTCCCATGCTTCGCGTCTTCAACAACACTGCCAGGTACG 118890 Query 104580 TAAATCAAGCTGGGCGTCGA-AAGGGATCTATCGCAGT------CTATCTTGAGCCATGG 104632 | | || ||||| | | ||| || || ||| | ||| || ||||| ||| Sbjct 118889 TTGACCA----GGGCGGCAATAAGCGACCTGGTGCATTTGCCATCTACCTCGAGCCTTGG 118834 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGG 104692 ||||| || | | || || ||||| ||||| ||||| || | || || || Sbjct 118833 CACGCAGACGTGTTTGACTTTCTTGATTTGCGAAAGAACCACGGCAAGGAAGAAAACCG- 118775 Query 104693 TGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 ||| ||||| |||||| ||||| ||||| |||||||| ||||||||| | || || | Sbjct 118774 TGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTTTTCATGAAGCGCGTCGAAAA 118715 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811 || || ||||| | ||| | ||||| || || ||||| || | ||| | || Sbjct 118714 GAACGGGGATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGATTGCTATGG 118655 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG-GGCGACTGCGACGG 104870 ||||||||||| || || ||| ||||| ||| || || || ||| | ||| Sbjct 118654 CGAGGAGTTTGAGGCTCTCTACGAGAAGTATGAGCGTGAGGGCCGTGGCCGC-AAGACTA 118596 Query 104871 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 | | || | || | | ||| | | || ||| |||| || |||||||| || | || Sbjct 118595 TTCGTGC-CCAGAAGCTCTGGTACTCCATACTCGAGTCCCAGACCGAGACGGGCAACCCC 118537 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989 | ||||| ||||| || ||||| ||| ||||| || || |||||| |||| || Sbjct 118536 TTTATGCTGTACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAATCTGGGAACCATT 118477 Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049 || || ||||| || || || ||| | || | | | |||||| ||||| Sbjct 118476 CGCAGCTCTAATCTGTGCACGGAGATCATTGAGTACTGTGCCCCTGATGAGGTTGCTGTT 118417 Query 105050 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC-ATTTGA 105108 || ||| | || || | || || || | || || | | | | || | | | || Sbjct 118416 TGCAACTTGGCCTCTCTTGCCCTGCCTGCCTTCGTCGA-CTACAAAGAAGGCCGCTACGA 118358 Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 | | || |||||||| || || || ||| | ||||| |||| | || || Sbjct 118357 CTTCCAGAAGCTCCACGAGGTGACTCAAGTGGTCGTCCGTAACCTCAACAAGATCATCGA 118298 Query 105169 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228 | ||| ||||||| ||||| ||||| || || ||| |||| || || || || Sbjct 118297 TGTCAATCATTACCCCATTGAGGAGGCTCGCAACAGCAACATGCGACATCGACCCATCGG 118238 Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATG-TATTCATTCTTTGTCGCCACGCATTTGATTCCG 105287 | | |||||||||||||| || || | | ||| | | || ||| | || || || Sbjct 118237 TGTTGGTGTTCAGGGTCTTGCCGACGCTTTTCTTGCCCTG-CGCATGCCCTTCGAGTCTC 118179 Query 105288 ACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGG 105347 ||| || || |||| || || || |||||||| || ||||| || || | Sbjct 118178 CCGAGGCCCGTGAGCTCAACAAGCAAATCTTCGAGACCATTTACCACGCTGCCCTGACAG 118119 Query 105348 CGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 105407 | | ||| |||| | | | || || || ||||| |||| ||||| || | Sbjct 118118 CTTCTCTTGAGCTGGCCAAAGAGCAAGGCCCCTACTCTACCTTCAAGGGCTCTCCCGCCT 118059 Query 105408 CACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-CTTC-----ACTACG 105461 | |||| || |||||||| || |||| |||| || |||| |||| | | Sbjct 118058 CTGAAGGTGTTCTTCAATTCGACATGT-GGAATGT-----CAAGCCTTCTGAGTTGTGGG 118005 Query 105462 ACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 | ||||| ||| ||||| | ||||||||| | ||| |||| ||| | || | | Sbjct 118004 AGTGGGACAATCTGAAGGAGCAGATCAAGGAGCACGGTATTCGCAACTCGTTGCTGCTCG 117945 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581 |||| ||||| || ||||| ||| | ||||| ||||||| ||||| |||||||| || | Sbjct 117944 CTCCCATGCCCACCGCCTCTACCTCGCAAATTCTGGGTAACAATGAGTGCTTTGAGCCAT 117885 Query 105582 ACACGACGAACATCTA 105597 ||||| | ||||| || Sbjct 117884 ACACGTCCAACATTTA 117869 >seq1 Length=456006 Score = 105 bits (116), Expect = 8e-18 Identities = 103/130 (79%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 94827 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAG 94885 ||| ||||| ||||||||| ||| |||| |||| | |||| |||||||||||||| | Sbjct 315285 TGTGGAGGGCATCTTCTTCAGCGGTGCCTT-TGCGTCGATTTTCTGGCTCAAGAAGCGTG 315343 Query 94886 GTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACC 94945 |||| ||||| || ||| |||||| ||||| |||||||| ||||| ||||| | ||| Sbjct 315344 GTCTGATGCCCGGCCTCACCTTCTCTAACGAACTTATCTCCCGTGATGAGGGTTTGCACA 315403 Query 94946 AAGAGTTTGC 94955 ||| ||||| Sbjct 315404 CAGATTTTGC 315413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583254114373080