Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq181 190 6e-43 seq79 187 8e-42 seq155 123 8e-23 seq92 107 6e-18 >seq181 Length=64741 Score = 190 bits (210), Expect = 6e-43 Identities = 183/235 (78%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | || || | ||| ||||||||||| || |||||||| | Sbjct 7576 TTTGCATACCACCCCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGT 7635 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || ||||| ||||| || ||||| || ||||||||||| || || ||||| | Sbjct 7636 AGTCGGACAAAGTTCGGCCATCCTCGAGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGT 7695 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| ||||| ||||| ||||| ||||| |||| ||||||||||| |||| ||| || | Sbjct 7696 CAGGGGGAATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAGG 7755 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||||||| | ||||| ||||| || || | || || || || |||||||| Sbjct 7756 ATTCAACTTCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 7810 Score = 167 bits (184), Expect = 7e-36 Identities = 178/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | ||||| || ||||| || ||||| || ||||| || | Sbjct 8105 TTTGCATACCACCTCGAAGGCGGAGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGT 8164 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 ||||||| | || || || || || || || |||||||| ||||||||||| ||||| | Sbjct 8165 AATCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGT 8224 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| |||||||| || || |||||||| || | || ||||| ||||| | |||||| | Sbjct 8225 CAGGGGGAATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATAGTATCAGACG 8284 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || |||| ||||| ||||| || || || || || || ||||| Sbjct 8285 ACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 8339 Score = 129 bits (142), Expect = 2e-24 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||||||||| | | || || ||||| | ||| || || || || || || Sbjct 7349 TTACTGACCACCACGCAGACGAAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTA 7408 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 || | || || || ||||| || || ||||| ||||| || || |||||||| || Sbjct 7409 GTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTC 7468 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 |||||| || || || ||||||||||| || | ||| ||||| || || | |||||| | Sbjct 7469 AGGAGGGATGCCCTCCTTATCCTGAATCTTGGATTTGACATTGTCGATGGTATCAGAAGA 7528 Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| | |||| |||||||| || | || || |||||||| ||||| Sbjct 7529 TTCGACTTCCAAGGTAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 7582 Score = 125 bits (138), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || ||||| || || || || || ||||| || || Sbjct 7808 CATACCACCACGGAGGCGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTC 7867 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || |||||||| || || || ||||| || || | || ||||||||||| Sbjct 7868 GGAGAGGGTACGGCCATCTTCCAGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGG 7927 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || ||||||||||| || | || ||||| || || | || || | || Sbjct 7928 AGGGATACCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTC 7987 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||||||||| | || || |||| || ||||| Sbjct 7988 GACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACAACTAT-TGCAT 8037 >seq79 Length=115064 Score = 187 bits (206), Expect = 8e-42 Identities = 487/736 (66%), Gaps = 15/736 (2%) Strand=Plus/Plus Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256 ||||| | || ||||| || ||||| || || ||||| || ||| | | | |||| | Sbjct 13084 CCGCTGTTGGTATCGACTTGGGTACCACGTACTCTTGCGTGGCTATCTATCGCGATGACC 13143 Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316 | ||||| ||| | ||||| || |||||| |||| || ||||| | || ||||| | Sbjct 13144 GATGCGAAATTATTCCCAATGAGCAGGGTAACCGAACTACCCCATCTTTTGTCGCATTCA 13203 Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376 || || |||||| ||||||| ||| |||| || ||||| | ||| ||||| | | Sbjct 13204 ATGACACCGAGCGTCTGATTGGCGATGCTGCCAAGAATCAGGTCGCTATGAATCCTCACA 13263 Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA--- 349432 | || || || || || || || | ||||| | ||||| ||| | || | Sbjct 13264 ACACCGTCTTCGACGCCAAACGTTTGATTGGCCGCAAGTTC----GACGA-TCCGGAGGT 13318 Query 349433 -CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAAT 349491 || ||||| | || || ||||| || | || || |||| | || ||||| || Sbjct 13319 CCAGGCTGATATGAAGCACTTTCCCTTCAAGGTGATTGAAAAACAAGGC---AAACCTAT 13375 Query 349492 TATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAAT 349551 | |||| |||| ||||| ||| | || |||| ||| |||||||| || || || Sbjct 13376 GGTCAAGGTCGAATTCAAAGGCGAAGAGAAGGAATTCACACCTGAAGAAATATCTTCCAT 13435 Query 349552 GGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGC 349611 | | | | || ||| || ||||| || | | || || | | || | | || Sbjct 13436 GATCCTCATCAAGATGCGCGAGATTGCCGAGGGCTTCTTGGGCACACCGGTCCCGAACGC 13495 Query 349612 TGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGG 349671 || | ||||| || ||||| || || || | ||| | || || || || || || Sbjct 13496 CGTCGTCACTGTCCCCGCCTACTTCAACGACTCTCAGAGGCAGGCTACCAAGGACGCCGG 13555 Query 349672 CAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGC 349731 | ||||| || | || || || | || || || || || ||||| || || ||||| Sbjct 13556 TCGTATTGCCGGACTCAACGTCCTTCGTATCATCAACGAGCCTACTGCCGCCGCTATTGC 13615 Query 349732 ATATGGGCTTGATAAAATGAGT-GACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTG 349790 || || || || || | ||| || || ||| | || ||||| ||| |||||| Sbjct 13616 CTACGGTCTCGACAAGAA-AGTCGAGGGTGAGCGCAATGTCCTGATTTTCGATCTAGGTG 13674 Query 349791 GTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAA 349850 ||||||| || ||||| || || || ||| |||| ||||| || || || || || | | Sbjct 13675 GTGGTACCTTCGATGTGTCTCTCCTCACAATTGAGGAGGGTATCTTCGAGGTCAAGTCCA 13734 Query 349851 CTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTG 349910 | || ||||| || || | ||||| || || || ||||| || || ||| ||||||| Sbjct 13735 CCGCCGGTGACACTCACTTGGGTGGTGAGGACTTCGATAACCGCCTTGTTAACCATTTTG 13794 Query 349911 TTAAAGAATTTAAGCG 349926 | || ||||| || || Sbjct 13795 TCAACGAATTCAAACG 13810 Score = 131 bits (144), Expect = 5e-25 Identities = 457/707 (65%), Gaps = 11/707 (2%) Strand=Plus/Plus Query 349965 TGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAA 350024 ||||||| || | ||||| || |||||||| ||||| || | || ||| | | || | Sbjct 13915 TGCGTCGTCTCCGTACTGCTTGCGAACGTGCCAAGCGCACCCTCTCTTCTGCAGCTCAGA 13974 Query 350025 CCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTG 350084 | | ||||| |||||||| || || || | ||||||| | ||||||| || | Sbjct 13975 CTACGATTGAGATTGATTCCCTATTCGAGGGTATCGATTTCTACACCCCTATTACCCGGG 14034 Query 350085 CTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAG 350144 | || || ||||| | || ||||||||| || | || || | ||||| || | Sbjct 14035 CCCGTTTCGAAGAGCTTTGCCAGGATCTTTTCCGATCCACCATCCAGCCTGTCGACCGTG 14094 Query 350145 TATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTT 350204 | | | || || || || |||| ||| || |||| | || || |||||||||| Sbjct 14095 TTCTCACTGACGCCAAGATTGACAAATCTCAAGTTCATGAGATTGTCTTGGTTGGTGGTT 14154 Query 350205 CTACACGTATTCCAAAAGT-TCAACAGTTACT-ATCT--GAGTTTTTTAATGGCAAAGAA 350260 | || || ||||| || || ||| ||| |||| || | ||||| |||||||| Sbjct 14155 CCACCCGAATTCC--CCGTATC--CAGAAACTCATCTCCGACTACTTTAACGGCAAAGAG 14210 Query 350261 CCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCT 350320 || | || || || || ||||| |||||||| || ||||| ||||| ||||| || Sbjct 14211 CCCAACAAGTCTATCAACCCTGATGAGGCTGTTGCGTACGGTGCCGCTGTCCAGGCTGCT 14270 Query 350321 ATTTTATCTGGAAATAAGAGTTCTAA---AATTGATGATCTATTACTACTAGATGTAACT 350377 || | ||||| | | ||| || | | || | || | || || || || Sbjct 14271 ATCCTGTCTGGTGACACTTCTTCCAAGTCTACCAACGAAATCTTGTTGCTTGACGTCGCT 14330 Query 350378 CCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAAT 350437 || | || || || | || || | |||| | | ||||| || ||||| | || Sbjct 14331 CCTTTGTCTCTGGGTATTGAGACCGCCGGTGGAATGATGACGAAGCTCATTCCCCGCAAC 14390 Query 350438 AGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCG 350497 | || | || || || |||||| || ||| || || ||| | || || ||||| | | Sbjct 14391 ACAACCATTCCAACCAAGAAGTCCGAAGTTTTCTCGACCTTTTCTGACAACCAGCCTGGG 14450 Query 350498 GTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGA 350557 || || || || ||||| || || || ||||| || || || || | || Sbjct 14451 GTGCTCATCCAGGTCTTTGAGGGCGAGCGACAGCGCACCAAGGACAACAACCTGATGGGC 14510 Query 350558 GAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCT 350617 | ||| || | || ||||| || || | || ||||||||||||||||| | Sbjct 14511 AAGTTTGAGCTTACTGGCATTCCCCCCGCTCCCCGTGGTGTTCCTCAGATTGAAGTTACC 14570 Query 350618 TTCGATATTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAA 350664 || ||| | || | ||||| || | ||||| | || |||||||| Sbjct 14571 TTTGATCTCGACGCCAATGGCATCATGAATGTCTCTGCCGTTGAAAA 14617 >seq155 Length=75750 Score = 123 bits (136), Expect = 8e-23 Identities = 227/330 (69%), Gaps = 2/330 (1%) Strand=Plus/Minus Query 378120 ATCAAATCCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATT-GTTTCTTACAG 378178 ||| || ||||| || ||||| |||| |||| || | || | || ||||| |||| Sbjct 50224 ATCCAACCCATCTTCGCCATACAAGAACTGAATGATGTC-TCCTAATGAGTTTCGCACAG 50166 Query 378179 TCATATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAAC 378238 || |||||| | | | |||||||| | || || | |||||||| ||| || | Sbjct 50165 TCCCATCATAACGTGCACTCAAATCTTCAAGAGCCTTGACCAGTCGTCGCTGAATGTATC 50106 Query 378239 CAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGA 378298 |||||| ||| || || ||||| || || | ||| | || ||| |||| || |||| Sbjct 50105 CAGTTTCGGCAGTCTTGACAGCAGTGTCGATAAGACCTTCTCGTCCAGCCATGGCGTGGA 50046 Query 378299 AGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGC 378358 |||| || || ||||||||||| |||| | | | || | || | || || | || Sbjct 50045 AGAAAAACTCGGTAGGAGTAAGACCACGGAGATAGGAGTTTTCGACGAAACCACGCGCTT 49986 Query 378359 CTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAA 378418 | || || | |||| |||||| |||| || ||||| || | | || ||| |||||| Sbjct 49985 CGGGGGAGTAGTCATCCTTTGTAAAATGCGGCAATGTTCGGTATTTGAAGCCAAATGGAA 49926 Query 378419 TTCGTTTTCCATCAACATTCTGTTGACCAA 378448 | || || || || ||| |||| ||||||| Sbjct 49925 TACGCTTGCCTTCCACAATCTGCTGACCAA 49896 Score = 98.7 bits (108), Expect = 3e-15 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 377494 ACACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGC 377553 ||||| ||||| ||||| || || ||||| | ||| || | |||||||||||| |||||| Sbjct 50871 ACACCGGCAAAATGGAACGTGTTCAGAGTCATTTGCGTGGCGGGCTCACCAATAGACTGC 50812 Query 377554 GCTGCAATAACGCCAACCATTTCTCCAGGATTGACAA 377590 ||||| | |||||| |||||||| ||||| |||||| Sbjct 50811 GCTGCCAGAACGCCGACCATTTCACCAGGGCTGACAA 50775 >seq92 Length=104316 Score = 107 bits (118), Expect = 6e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 140574 GTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATT 140633 || || |||||||| || || || ||||||||||| || |||||||| || || ||||| Sbjct 34803 GTGCGGCCATCTTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATG 34862 Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693 || || || ||||| || || | || || || ||||| | || || | || || ||| Sbjct 34863 CCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCA 34922 Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | ||||| || || || ||||| || ||||||||||| Sbjct 34923 AGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 34966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515236597181351