Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq56 237 2e-57 seq73 93.3 5e-14 >seq56 Length=135535 Score = 237 bits (262), Expect = 2e-57 Identities = 474/698 (68%), Gaps = 6/698 (1%) Strand=Plus/Minus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||| ||| || | ||| | ||| ||| || |||||| | || || || |||||| Sbjct 119184 GAGACCTACCACCTCATGTCCAGCAAGCTCTTCACCCACGCCTCACCTACACTCTTCAAC 119125 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 |||||||| || |||| |||| ||| ||||| || | |||||||| ||| Sbjct 119124 GCTGGTACCCCCCAATGTCAGCTGTCTTCCTGTTTCCTAGTCGACATGAAGGACGACAGC 119065 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 || ||||| |||||||| || |||||| |||||| ||||||||| | | |||||| Sbjct 119064 ATTGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGT 119005 Query 53423 ATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480 ||||| | || || | || ||||||| | |||| | || || || |||| Sbjct 119004 ATCGGCTTGAACG--TCCACCGCATCCGTGCTACCGGCTCTTACATTGCCGGCACCAACG 118947 Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | || | || ||| | || ||||| ||||||||||||||||| ||| ||||||| Sbjct 118946 GTACATCCAACGGCATCATTCCCATGCTTCGCGTCTTCAACAACACTGCCAGGTACGTTG 118887 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 ||||||| || ||||| || | || ||||||||||||||||| |||||||| | Sbjct 118886 ACCAGGGCGGCAATAAGCGACCTGGTGCATTTGCCATCTACCTCGAGCCTTGGCACGCAG 118827 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGT 53659 || | | || ||||| || |||| ||| || || | ||||| | || ||| || Sbjct 118826 ACGTGTTTGACTTTCTTGATTTGCGAAAGAACCACGGCAAGGAAGAAAACCG-TGCTCGC 118768 Query 53660 GACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAG 53719 ||||| || ||||||||||| || || || |||||| | || || ||| ||| | Sbjct 118767 GACCTCTTCCTTGCTCTGTGGATCCCAGATCTTTTCATGAAGCGCGTCGAAAAGAACGGG 118708 Query 53720 GAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAG 53779 || ||| ||| ||||| || ||||||||||| ||||| | | ||| || |||||| Sbjct 118707 GATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGATTGCTATGGCGAGGAG 118648 Query 53780 TTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCG 53839 ||| | | | || || ||| | | ||||||| | |||| | || Sbjct 118647 TTTGAGGCTCTCTACGAGAAGTATGAGCGTGAGGGCCGTGGCCGCAAGACTATTCGTGCC 118588 Query 53840 CGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGC 53899 | || | ||| | | || ||| || |||| |||||||| | || | ||| Sbjct 118587 CAGAAGCTCTGGTACTCCATACTCGAGTCCCAGACCGAGACGGGCAACCCCTTTATGCTG 118528 Query 53900 TACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAA 53937 ||||||||| | |||| |||||||||||||||||| Sbjct 118527 TACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAA 118490 Score = 102 bits (112), Expect = 9e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 |||||| | ||| ||| || ||||||||| | ||| | | || | ||| | Sbjct 117716 TCAAGGCTCTCTACAAGACTGTTTGGGAGATTTCTCAGCGTCATGTTATCCAGATGGCCG 117657 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 | || || ||||| | ||||||||||||||||| || ||| | |||| || ||||| Sbjct 117656 CCGACCGCGGTGCCTTTATCGACCAGTCCCAGTCGCTCAACGTTCACATGAAGGATCCTA 117597 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | ||| |||| | | ||| ||||||||| || |||||| ||| ||||||||||| | Sbjct 117596 CTATGGGCAAGATCACCTCTATGCACTTTGCTGGCTGGAAGTTGGGTCTCAAGACGGGCA 117537 Query 55908 TGTACTATCTGCGGAC 55923 ||||||| |||| || Sbjct 117536 TGTACTACTTGCGCAC 117521 >seq73 Length=117354 Score = 93.3 bits (102), Expect = 5e-14 Identities = 200/299 (67%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || |||||| | || || | ||||| ||||| |||||||| || || | || || Sbjct 2827 CGGGTGAAGGTATAACGAGGACTGGCAGCATCGGAACCACCTGCGAGACGGGAACCGAAG 2886 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | || ||||| |||| |||| ||||||| || | || ||||| ||||| Sbjct 2887 TTACCGCTTGGCTCCAGGATATTGATATTGTTGGATCCAATAAAGTTCTGTGCCAAGCCG 2946 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 | |||||| ||||| || |||||||||||||| || |||||||| | || || Sbjct 2947 ATAATCGTCTGTTGCAGCGAGGCCTCACCGTGGTGATATGCAGTCTGCTCAGAGACATAA 3006 Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 || || | | | | ||||| | ||| | ||| || ||| | || ||||| | Sbjct 3007 CCAGCGAGTTCCACAACCTTTTTATCCTTGACCAGATTTCGCTTAAAGCAAGCGTAGAGA 3066 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 ||||| ||||| |||||||| ||||| | ||| || || |||||| || |||| Sbjct 3067 ACCTTTCGCTGACCAGGTTTCAAGCCGTCAATGACGGACGGGATAGAACGCATGTTGTC 3125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547209727536600