Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq56 224 1e-53 seq181 194 2e-44 seq92 143 3e-29 seq47 120 3e-22 seq73 109 6e-19 >seq56 Length=135535 Score = 224 bits (248), Expect = 1e-53 Identities = 909/1408 (65%), Gaps = 52/1408 (4%) Strand=Plus/Plus Query 80374 CGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGA 80433 || ||| | || | ||| | ||||| |||||||| ||| ||||| || || || || Sbjct 117860 CGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTACCCAGAATTTGC 117919 Query 80434 GCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTG 80493 | || || || ||||| || ||| || || || || || | ||||||| |||| Sbjct 117920 GAGGTAGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACCGTGCTCCTTG 117979 Query 80494 ATATCCTCGCGCAAATCTGACCAAAAATCA--ACCCC-AACGCTGTGACC--CCACATGT 80548 || | ||| || || || || | || || | || ||| |||| |||||||| Sbjct 117980 ATCTGCTCCTTCAGAT-TGTCCCACTCCCACAACTCAGAAGGCT-TGACATTCCACATGT 118037 Query 80549 CGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCG 80608 || || | | || || || || ||||| ||| ||| || ||| ||||| | | Sbjct 118038 CGAATTGAAGAACACCTTCAGAGGCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCT 118097 Query 80609 TCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCT 80668 |||||||||||| || | | ||||| ||||| |||||| ||| |||| || Sbjct 118098 CTTTGGCCAGCTCAAGAGAAGCTGTCAGGGCAGCGTGGTAAATGGTCTCGAAGATTTGCT 118157 Query 80669 TGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACA-CGTCA 80727 |||| | | || |||| || ||||| | || || || || ||| | |||| Sbjct 118158 TGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGCA-GGGCAAGAAAAGCGTCG 118216 Query 80728 GCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTC 80786 || || |||||||| || | |||| || || || ||| |||| | | || ||||| Sbjct 118217 GCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCTGTTGC-GAGCCTC 118275 Query 80787 CGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGT 80846 | ||| |||||| || |||||||| ||| ||||| || || || | || Sbjct 118276 CTCAATGGGGTAATGATTGACATCGATGATCTTGTTGAGGTTACGGACGACCACTTGAGT 118335 Query 80847 AACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTC----------ACAAATGCCG 80896 || || || || ||||| |||||| | || ||||| || || || | Sbjct 118336 CACCTCGTGGAGCTTCTGGAAGTCGTAGCGG----CCTTCTTTGTAGTCGACGAAGGCAG 118391 Query 80897 GAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCA---GCATCTGTAAACTCGA 80953 | ||| || || |||| ||||| || || ||||| ||| ||| | || |||| | Sbjct 118392 GCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCA-CAGT--ACTCAA 118448 Query 80954 CGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGG 81013 ||| |||||||||| |||||| ||| || ||||| || |||||||| ||| Sbjct 118449 TGATCTCCGTGCACAGATTAGAGCTGCGAATGGTTCCCAGATTCTTCTGGTTGCTCTTCC 118508 Query 81014 CGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGA 81073 |||||| || |||||||| ||| | ||| | || |||||| ||| |||| ||| | Sbjct 118509 TGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTCTCGGTCTGGGACTCGAGTA 118568 Query 81074 TGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACT 81133 ||| || ||| | || | || | ||||||| ||| || | |||||| Sbjct 118569 TGGAGTACCAGAGCTTCTGGGCACGAATAGTCTTGCGGCCACGGCCCTCACGCTCATACT 118628 Query 81134 TGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAG 81193 | |||| | || |||| | || | |||| ||| | ||||||||||| | Sbjct 118629 TCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGG 118688 Query 81194 GGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCC 81253 | ||||| ||| ||| || || || || || |||||||||| || ||||||| Sbjct 118689 GACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAAAGATCTGGGATCC 118748 Query 81254 AGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAAC 81312 | || || ||| |||||||| ||| || || || | || ||||| ||||| Sbjct 118749 ACAGAGCAAGGAAGAGGTCGCGAGCA-CGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAA 118807 Query 81313 TCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGC-GATCGACC-CCT 81370 || |||||||| | | ||| || ||||| ||||| || || | ||| || ||| | Sbjct 118808 TCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGT 118867 Query 81371 TGC-GACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGG 81429 || | ||| ||||||| ||||| | |||||| ||| || || || | ||| || Sbjct 118868 CGCTTATTGCCGCCCTGGTCAACGTACCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGA 118927 Query 81430 ATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTG 81489 ||||| || | || |||||| || || | || || || | || || | || Sbjct 118928 ATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGA---TG 118984 Query 81490 CTGATTGA-----AAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCA 81544 | | | || ||| ||||| ||||| | | ||| || ||| ||||| || | Sbjct 118985 C-GGTGGACGTTCAAG-CCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGA 119042 Query 81545 TGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACA 81604 || || || || || || ||||| || | |||||||| | | ||||||| |||| Sbjct 119043 GAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGACA 119102 Query 81605 TCTGAGGGCTTTTTGAG---CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAAC 81661 |||| | || | | || || ||||| ||||| || | ||||| |||| Sbjct 119103 GCTGA---CATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCT 119159 Query 81662 GGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGA 81721 | | ||||| |||| ||||| ||| |||||| ||| | ||| || |||||||| Sbjct 119160 TGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGTTCAATGTTGTCTCCCCAAATACCGA 119219 Query 81722 TAGCTACACGCATAAACATGTACTGGGG 81749 || || ||||||| ||||| ||| || Sbjct 119220 CCGCAACGCGCATAATCATGTGCTGAGG 119247 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| |||| |||| |||||||||||||||||||| ||| ||||||||| | |||| Sbjct 117515 GCCTGCGTGCGCAAGTAGTACATGCCCGTCTTGAGACCCAACTTCCAGCCAGCAAAGTGC 117574 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 ||||| ||| ||| | | || || | || |||| | ||| || ||||| ||||| Sbjct 117575 ATAGAGGTGATCTTGCCCATAGTAGGATCCTTCATGTGAACGTTGAGCGACTGGGACTGG 117634 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAA 80188 ||| || || || || || || ||||| | |||| Sbjct 117635 TCGATAAAGGCACCGCGGTCGGCGGCCATCTGGATAA 117671 >seq181 Length=64741 Score = 194 bits (214), Expect = 2e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 8339 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTCGTCT 8280 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | ||| | || ||||||||||||||||||||||| || |||||| Sbjct 8279 GATACTATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGAATTCCCCCTGACCAG 8220 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||||||||| || ||||| ||||| |||||||| | || || || | || || || Sbjct 8219 CAGCGTCTAATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCTGATTACAAC 8160 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || ||||| || || | || ||||| ||||| Sbjct 8159 ATTCAGAAGGAGTCAACACTTCACCTCGTTCTCCGCCTTCGAGGTGG 8113 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || |||||||||||||| | || ||||| || Sbjct 7810 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTTGAATCCTCG 7751 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | ||| |||| ||||| || ||||| || ||||| || |||||| Sbjct 7750 GATACGATCGATAATGTAAAGTCTAAGATTCAAGATAAGGAAGGCATTCCCCCTGACCAG 7691 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||||||||||||||||||||||| || || | | ||||| ||| Sbjct 7690 CAGCGACTCATCTTTGCTGGTAAGCAACTCGAGGATGGCCGAACTTTGTCCGACTACAAT 7631 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || ||||| ||| | ||| ||||||| || ||||| Sbjct 7630 ATTCAGAAGGAGTCTACTCTGCATTTGGTCCTGCGTCTGCGGGGTGG 7584 Score = 167 bits (184), Expect = 3e-36 Identities = 174/227 (77%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||| | |||||||||| | ||||| ||||| || || |||||||| ||||| Sbjct 8037 ATGCAA-TAGTTGTCAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTCGAGTCCTCC 7979 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || |||||||| |||||||| || ||||| || ||| Sbjct 7978 GACACCATCGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCTCCTGATCAG 7919 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | ||||| ||||||||||| || || |||| |||||||| | ||||| ||| Sbjct 7918 CAGCGATTGATTTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACCCTCTCCGACTACAAT 7859 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| ||||| || ||| | || || || ||||| Sbjct 7858 ATCCAGAAGGAATCCACCCTTCACCTCGTCCTCCGCCTCCGTGGTGG 7812 Score = 143 bits (158), Expect = 3e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||||||||| | || || ||||||||||| | || || || || | Sbjct 7582 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTCGAATCTTCT 7523 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | || | || |||||||| |||||||| || ||||| |||||| Sbjct 7522 GATACCATCGACAATGTCAAATCCAAGATTCAGGATAAGGAGGGCATCCCTCCTGACCAG 7463 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || || || |||||||| || ||||| || || || | || || || ||| ||||| || Sbjct 7462 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGC-GACTACAA 7404 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| |||||| |||| | ||||| || | ||||| || ||||| || Sbjct 7403 CATCCAGAAGGAAAGCACTTTGCATCTCGTGCTTCGTCTGCGTGGTGGTCA 7353 >seq92 Length=104316 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||| || || || || ||||| || || |||||||| ||||| Sbjct 34966 ATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 34907 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| | || || |||||||||||||| ||||| || |||||| Sbjct 34906 GACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 34847 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || || || || |||||||||||||| ||||| |||| || ||||| ||| ||||| || Sbjct 34846 CAACGACTTATCTTTGCTGGTAAGCAGCTCGAAGATGGCCGCACCCTGAGC-GACTACAA 34788 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||| || || | || |||| || || ||||| Sbjct 34787 CATCCAGAAGGAGAGCACCCTGCACTTGGTGCTGCGCCTGCGTGGTGG 34740 >seq47 Length=141222 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || |||||||| || || |||||||| || || |||||||| ||||| || | || Sbjct 51751 TTCGTCAAGACTCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACGATC 51692 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | ||||| || ||||||||||| ||||| || ||||||||||| | Sbjct 51691 GACAATGTCAAGTCCAAAATCCAAGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATTG 51632 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||| ||||| || ||||| | ||| ||||| | ||||| || | || ||| Sbjct 51631 ATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTCCGACTACAACATTCAGAAG 51572 Query 27595 G 27595 | Sbjct 51571 G 51571 >seq73 Length=117354 Score = 109 bits (120), Expect = 6e-19 Identities = 280/421 (67%), Gaps = 4/421 (1%) Strand=Plus/Minus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTG-TC 32042 |||||| | || ||| ||||| ||||| | ||||| ||| | ||| || ||| || Sbjct 3095 GACGGCTTGAAACCTGGTCAGCGAAAGGTTCTCTACGCTTGCTTTAAGCGAAATCTGGTC 3036 Query 32043 GAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCA 32102 || || | ||||| | | | || | || || || | ||||| || || |||||||| Sbjct 3035 AAG-GATAAAAAGGTTGTGGAACTCGCTGGTTATGTCTCTGAGCAGACTGCATATCACCA 2977 Query 32103 CGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAA 32162 ||| ||||| ||||| || || ||| || | | || ||||||||| | || | || Sbjct 2976 CGGTGAGGCCTCGCTGCAACAGACGATTATCGGCTTGGCACAGAACTTTATTGGATCCAA 2917 Query 32163 TAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGA 32222 || | || | || |||||| || | || || |||| ||||| ||||| || Sbjct 2916 CAATATCAATATCCTGGAGCCAAGCGGTAACTTCGGTTCCCGTCTCGCAGGTGGTTCCGA 2857 Query 32223 TGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCACC-TTCGACGCGCAAGATTTTCG 32281 |||||| || | ||||| | ||||||||| || || || |||| | | ||||| || Sbjct 2856 TGCTGCCAGTCCTCGTTATACCTTCACCCGCCTGGCGCCTTTCGCCAAG-AAGATCTTTT 2798 Query 32282 ACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGG 32341 ||| ||| || | || ||||| | | |||||| | ||||| | || || | Sbjct 2797 CCCCCATGGATGAGCCCAGCCTTAAGTATCAGTATGATGATGACAAGCGGATTGAACCAG 2738 Query 32342 TGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACGG 32401 | |||| ||| | |||| ||| | | || || ||||| || || |||||||| | Sbjct 2737 AGGTCTATTCTCCTATTATTCCCATGGTTCTTGTCAATGGTGCCGACGGTATCGGAACCG 2678 Query 32402 G 32402 | Sbjct 2677 G 2677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570303862817040