Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15]
917 sequences; 32,918,153 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq92 107 1e-18
seq181 84.2 1e-11
>seq92
Length=104316
Score = 107 bits (118), Expect = 1e-18
Identities = 159/223 (71%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| |||| |||||| || || ||||||||||| || ||||| || || || || ||
Sbjct 34749 AGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGG 34808
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| || || ||||| ||||| || | || || |||||||| || | ||||||
Sbjct 34809 CCATCTTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCC 34868
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || ||| | ||| ||||| |||||| || | |||
Sbjct 34869 TTGTCCTGGATC-TTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGT 34927
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
||||| || || || | ||||| || ||||||||||| |||
Sbjct 34928 GATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTTG 34970
>seq181
Length=64741
Score = 84.2 bits (92), Expect = 1e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574
|||||| |||||||| ||||| ||||| || || |||| || || || || || || ||
Sbjct 8148 CTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAA 8207
Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613
|||| |||||| ||||| || || | ||||||||||||
Sbjct 8208 GATTAGACGCTGCTGGTCAGGGGGAATTCCCTCCTTGTC 8246
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314726082601661
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |