Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq181 113 4e-20 seq47 109 5e-19 >seq181 Length=64741 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 ||||||| || || || || || || ||||||||| | |||||||| || || || ||| Sbjct 8341 CCATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTCGT 8282 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | || | ||||| | ||||| || ||||| ||||| || || || || || || | Sbjct 8281 CTGATACTATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGAATTCCCCCTGACC 8222 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | |||||| |||| | ||| || || || | || ||| | || |||| ||||||| Sbjct 8221 AGCAGCGTCTAATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCTGATTACA 8162 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||| |||||||| || | || | ||| | || | || ||||| || Sbjct 8161 ACATTCAGAAGGAGTCAACACTTCACCTCGTTCTCCGCCTTCGAGGTGGTAT 8110 >seq47 Length=141222 Score = 109 bits (120), Expect = 5e-19 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 26981 ATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGA 27040 |||| |||| ||| | | || || |||||||| |||||| | || || ||||| || || Sbjct 51765 ATACACCATTCAGTT--TCGTCAAGACTCTGACGGGCAAGACCATCACCCTTGAGGTCGA 51708 Query 27041 ACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACC 27100 | || ||| |||| || | ||||| ||||| |||||||| || ||||| || || Sbjct 51707 GTCCTCGGACACGATCGACAATGTCAAGTCCAAAATCCAAGACAAGGAGGGCATTCCCCC 51648 Query 27101 CGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGA 27160 || || ||||| || || | ||| ||||| || | || ||| || ||| | ||||| Sbjct 51647 TGACCAGCAGCGATTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTCCGA 51588 Query 27161 TTACAACATTCAAAAGG 27177 ||||||||||| |||| Sbjct 51587 CTACAACATTCAGAAGG 51571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434913414747840