Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq181 95.1 8e-15 seq92 91.5 1e-13 >seq181 Length=64741 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| || || || || |||||||| || || || | Sbjct 8339 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTCGTCT 8280 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | || | || | || ||||| || || | || || || || Sbjct 8279 GATACTATTGACAATGTCAAGTCGAAGA-TTCAGGACAAGGAGGGAATTCCCCCTGACCA 8221 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| |||| || || || || || || || |||| |||||| | |||||||| Sbjct 8220 GCAGCGTCTAATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCTGATTACAA 8161 Query 23790 CATACAAAAAGAGTCCACA 23808 ||| || || ||||| ||| Sbjct 8160 CATTCAGAAGGAGTCAACA 8142 >seq92 Length=104316 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||||||||| || |||||||| || || || || || Sbjct 34969 AAGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 34910 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||| | | || || || ||||| || || | || || || Sbjct 34909 TCCGACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 34850 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || || | || ||||| || || || || ||||| | ||||| | |||| ||| Sbjct 34849 CAGCAACGACTTATCTTTGCTGGTAAGCAGCTCGAAGATGGCCGCACCCTGAGCGACTAC 34790 Query 23788 AACATACAAAAAGAG 23802 ||||| || || ||| Sbjct 34789 AACATCCAGAAGGAG 34775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338005822425836