Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq181 140 8e-28 seq92 140 8e-28 seq47 127 5e-24 seq193 116 9e-21 >seq181 Length=64741 Score = 140 bits (154), Expect = 8e-28 Identities = 159/212 (75%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || |||||||| || |||| |||||| |||| | || | |||||| Sbjct 7827 AGGACGAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCT 7886 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| |||||||| || | ||| || || || || || ||||| ||||| || Sbjct 7887 TCCAGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTATCC 7946 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| ||||||||||| |||| || || || | ||||| ||| Sbjct 7947 TGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTC 8006 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| || | ||| |||||| Sbjct 8007 TTTCCGGTCAAAGTCTTGA-CAACTATTGCAT 8037 Score = 107 bits (118), Expect = 5e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || | |||| ||| || |||| ||||| ||| || || | || ||| Sbjct 7371 AGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCT 7430 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || || ||||||||||| ||||| || || || || ||||| || Sbjct 7431 TCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCAGGAGGGATGCCCTCCTTATCC 7490 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| || ||| |||||||| || || | ||| || || || || || ||| Sbjct 7491 TGAATCTTGGATTTGACATTGTCGATGGTATCAGAAGATTCGACTTCCAAGGTAATAGTC 7550 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | || | |||||| Sbjct 7551 TTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 7582 Score = 105 bits (116), Expect = 2e-17 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || ||||| || || || || || || | |||||||| | | ||| Sbjct 8119 CGAAGGCGGAGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTG 8178 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||||||||| || || || ||||| || ||||| || Sbjct 8179 CGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGAATTCCC 8238 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || ||||| ||| ||| || || || || || | || || || | Sbjct 8239 TCCTTGTCCTGAATCTTCGACTTGACATTGTCAATAGTATCAGACGACTCGACCTCGAGA 8298 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| || | || || | ||| | |||||| Sbjct 8299 GTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 8339 >seq92 Length=104316 Score = 140 bits (154), Expect = 8e-28 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | ||| || ||| || || |||| ||||| ||| || || Sbjct 34745 ACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGT 34804 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||| |||||||||||||| ||||| || ||||| || Sbjct 34805 GCGGCCATCTTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCC 34864 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| || || |||||||| || | ||||| || | Sbjct 34865 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAG 34924 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||||| ||||| | ||||| | ||| | ||||| || Sbjct 34925 GGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTT 34969 >seq47 Length=141222 Score = 127 bits (140), Expect = 5e-24 Identities = 130/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594 ||||| |||| || |||| || || || |||||||| ||||||||||| | ||| || Sbjct 51582 TTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAATCGCTGC 51641 Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654 ||||| || ||||| || |||||||||||||| || ||| ||| ||||| ||||| Sbjct 51642 TGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCGATCGTGTCC 51701 Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||| || || || | ||||| ||||||||||||| ||| || | ||| Sbjct 51702 GAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAA 51751 >seq193 Length=64090 Score = 116 bits (128), Expect = 9e-21 Identities = 200/287 (70%), Gaps = 5/287 (2%) Strand=Plus/Plus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGA 7498 ||| |||||| ||||||||| | || || || ||||| ||||||| |||||| | Sbjct 50931 AACATTATATCTAATATTTGCTTTATTCTCAGG-ATTATTAGGTACTGCATTTTCAGTAT 50989 Query 7499 TTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTT 7558 | ||||| ||||||||| || || || |||| || | |||| |||| | | Sbjct 50990 TAATAAGATTAGAATTAAGTGGACCAGGAGTTCAA---TTCATATCAAATAACCAATTAT 51046 Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618 | || ||| |||| || || || || | ||||| ||||| | |||||||| | Sbjct 51047 ATAATAGTATCGTTACAGCTCACGCTTTATTAATGATATTCTTCATGGTTATGCCTGCAT 51106 Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678 | || || || || || |||| | | ||||||||| | || | |||||||||||| | Sbjct 51107 TAATCGGAGGATTTGGTAATTTCCTTATGCCTTTAATGGTAGGAGGTCCTGATATGGCAT 51166 Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 | || || | || ||||||||||| |||||| |||| ||| |||| Sbjct 51167 TCCCTAGATTAAATAATATAAGTTTCTGATTATTACCTCCTAGCTTA 51213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192517188876398