Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1 125 6e-24 >seq1 Length=456006 Score = 125 bits (138), Expect = 6e-24 Identities = 339/510 (66%), Gaps = 18/510 (4%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 ||||| ||||| |||||||| |||||||| || || ||||| | || ||||| || Sbjct 315707 TTTTGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTGCCACCCAAGGAAATGTTC 315648 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| ||||| || || || | | ||||| ||||| || | | ||| | Sbjct 315647 TCCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCG---TTACCAAGTGCAACC 315591 Query 4377 AAT---CGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATT 4433 ||| || || || |||||||| ||||| || |||| ||| | ||| || || | Sbjct 315590 AATAGACGATCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGTTCATGCCTAGG 315531 Query 4434 A-ATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGAT 4492 | | | ||| || || || | |||||||||||||| || || || || || ||||| Sbjct 315530 AGAGCACAC-GGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAGCGTCGGTGAT 315472 Query 4493 TATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAA--ACAATAAACAC 4550 ||||| | || | | || | ||| | | |||| || | | ||| | ||| Sbjct 315471 AATATCCTGGATAATTTGCTT-GCTGGCTCGGTGCTTAAG-ATGCGAGTGCAACAGACAT 315414 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 |||||||| |||||||| || || | | || ||||||||||| || || | ||| Sbjct 315413 GCAAAATCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGGCCG 315354 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 ||||| | ||| | ||| || ||||| || || | ||||| | || ||||| ||| Sbjct 315353 GGCATCAGACCACGCTTCTTGAGCCAGAAAATCGACGCAAAGGCACCGCTGAAGAAGATG 315294 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGG---CTTTGTCTTTA 4727 || || || || || || || || || || ||| |||||| | ||||| | | Sbjct 315293 CCCTCCACAGCAGCGAAAGCCACCAAGCGCTGGGCGA---AGCTGGAATCCTTGTCCTGA 315237 Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTC 4757 ||||| | ||||||| ||||||||| Sbjct 315236 ATCCAACGAATGGCCCAGTCTGCTTTTTTC 315207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427044827320361