Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 2e-14 >seq1 Length=456006 Score = 95.1 bits (104), Expect = 2e-14 Identities = 197/293 (67%), Gaps = 3/293 (1%) Strand=Plus/Minus Query 48402 TCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCC 48461 ||||| | ||| |||| || | ||| || |||| ||||||||||| || || Sbjct 315097 TCTTTGATGTAGCTATCGATCAGGAGAGAGTATGTTTCAGAGTGAATATTCTCCATCATG 315038 Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA 48521 ||||| ||||| || || || | || || | | ||| ||||| | || || ||| Sbjct 315037 ATCTGGAATCCATAGAAGCAACGAGCCTCCGGAACCTGAACCTCGCCGCTGAAACGCTCA 314978 Query 48522 GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATA 48581 ||| || ||||| || || || ||| ||||||||| ||||| || | ||| ||| Sbjct 314977 AGCAAGTTTTCATTGACAATGCCGTCAGAAGCAGCAAAGAATGCCAAAATGTGTGAGATA 314918 Query 48582 AAATATTTTTCGTTGGAAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCT 48638 || ||||| |||| | ||| | || ||||| || | | || || || | ||| Sbjct 314917 AAGTATTTCTCGTCGTCGCTCAGACGGTTGTTCCAATCGTGCAAGTCCTTGGACAGATCG 314858 Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 | ||||| || ||||| || || || || || || |||||||| | ||| || Sbjct 314857 ATCTCTTCGGCCGTCCAGAAAGAGGCTTCGGCCTTCTTATACATTTGCCAAAT 314805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694660837358880