Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq56 196 7e-45 seq1 116 5e-21 >seq56 Length=135535 Score = 196 bits (216), Expect = 7e-45 Identities = 733/1142 (64%), Gaps = 22/1142 (2%) Strand=Plus/Plus Query 76087 AATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGA 76146 || ||| || || || || |||||||| |||| ||| || |||| ||||| | | ||| Sbjct 118204 AAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCT 118263 Query 76147 AATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 76206 | ||| || ||| ||||||| ||| | ||| || || || ||||| || | ||| Sbjct 118264 GTTGCGAGCCTCCTCAATGGGGTAATGATTGACATCGATGATCTTGTTGAGGTTACGGAC 118323 Query 76207 AACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTATC------AC 76260 || |||| | ||| || | || || | || || | || ||| | || Sbjct 118324 GACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCTTCTTTGTAGTCGAC 118383 Query 76261 AAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCA-- 76318 || | || || | ||| || | || ||||| || ||||||| || |||| Sbjct 118384 GAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGG---GGCACA 118440 Query 76319 -TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTT 76377 || | || ||||||||||| |||||| | || ||||| ||||| | ||||| Sbjct 118441 GTACTCAATGATCTCCGTGCACAGATTAGAGCTGCGAATGGTTCCCAGATTCTTCTGGTT 118500 Query 76378 GCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGA 76437 |||||| |||| || | ||||| || || | ||| || | || || || |||| || Sbjct 118501 GCTCTTCCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTCTCGGTCTGGGA 118560 Query 76438 TTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATC---GCTTCTC 76494 |||| || || | ||||| | ||| | | |||| ||| | | ||| Sbjct 118561 CTCGAGTATGGAGTACCAGA-GCTTCTGGGCACGA--ATAGTCTTGCGGCCACGGCCCTC 118617 Query 76495 TCTTTCATA-TTGT-GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 | ||||| || | ||| | | || ||||| || || || | |||| ||| ||| Sbjct 118618 ACGCTCATACTTCTCGTAGAGAGCC--TCAAACTCCTCGCCATAGCAATCAGCCAGGCCA 118675 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAG 76612 || || || || |||||||| | | ||| || || | | | || || ||||| || Sbjct 118676 GGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAA 118735 Query 76613 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTA 76672 ||||| || ||||| ||||||| || || || || | | |||||| || || Sbjct 118736 AGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGG 118795 Query 76673 TTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCC 76732 |||||| | ||| || || || | | || | ||||| || || || || || || Sbjct 118796 TTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCA 118855 Query 76733 ATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACT 76792 | |||| ||||| ||||| || ||||| || | || ||||||||||| || | || Sbjct 118856 AATGCACCAGGTCGCTTATTGCCGCCCTGGTCAACGTACCTGGCAGTGTTGTTGAAGACG 118915 Query 76793 CTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACAT 76852 | | ||| ||||| |||||||| |||||||| || || || | ||| ||| || Sbjct 118916 CGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTA 118975 Query 76853 GCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAG 76912 ||||| || | | ||| || || || ||||| || ||||| | |||||| Sbjct 118976 GCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCACAG 119035 Query 76913 CGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAG 76972 || | ||||| ||||| || || || || || ||| |||||| | || |||||| Sbjct 119036 GTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAG 119095 Query 76973 CTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAAC 77032 ||||| ||| || || || || || || | |||||| || || || ||||| Sbjct 119096 GAAGACAGCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAG 119155 Query 77033 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATT 77092 || || | || | ||| || || | ||| ||| || | | ||| Sbjct 119156 AGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGTTCAATGTTGTCTCCCCAAATA 119215 Query 77093 CCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTC 77152 || || || || ||||| | ||| ||||||||||| || || |||| || | ||| Sbjct 119216 CCGACCGCAACGCGCATAATCATGTGCTGAGGTCGCTCGACGATCTTGCCGTTGAGTTTG 119275 Query 77153 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCG 77212 | | |||||| | |||| ||| || || ||||| || | || |||||||| ||| Sbjct 119276 AGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATAGTTGAAGTCTCTGTCG 119335 Query 77213 TA 77214 || Sbjct 119336 TA 119337 >seq1 Length=456006 Score = 116 bits (128), Expect = 5e-21 Identities = 337/516 (65%), Gaps = 7/516 (1%) Strand=Plus/Minus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 |||||| || ||||| ||||| || || || |||||||| || || || ||||| | Sbjct 315720 CATAACGCCAGCCTTTTGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTGCCACC 315661 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCC 46445 ||| || || || ||||| ||||| || || || | || || | |||| || Sbjct 315660 CAAGGAAATGTTCTCCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACC 315601 Query 46446 TAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATT 46505 | | | | || | ||| || || ||||| ||||| ||||| | | || Sbjct 315600 AAGTGCAACCAATAGACGATCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGTT 315541 Query 46506 CATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGC 46565 ||| |||| ||| ||| |||||||| || | ||||||||| ||||| ||||| Sbjct 315540 CATGCCTAGGAGAGCACACGGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAGC 315481 Query 46566 ATCCG--ATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAAC 46623 || | ||| |||| | || | || || || | | | ||| | | ||| | Sbjct 315480 GTCGGTGATAATATCCTGGATAAT--TTGCTTGCTGGCTCGGTGCTTAAGATGCGAGTGC 315423 Query 46624 ATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAAT 46683 | | |||||||||||| || | || ||||| | || | ||||||||| || Sbjct 315422 AACAGACATGCAAAATCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAG 315363 Query 46684 GTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAA 46743 ||||| || ||||| || |||||||| |||||||| || || | ||| || | || Sbjct 315362 GTGAGGCCGGGCATCAGACCACGCTTCTTGAGCCAGAAAATCGACGCAAAGGCACCGCTG 315303 Query 46744 AAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT- 46802 ||||| ||||| || ||||| ||||| || || | | || || | |||| ||| || Sbjct 315302 AAGAAGATGCCCTCCACAGCAGCGAAAGCCACCAAGCGCTGGGCGAAGCTGGAATCCTTG 315243 Query 46803 --ATGAATCCACCTTTGAGCCCAATCAGCCTTTTTC 46836 |||||||| | ||||| || || |||||| Sbjct 315242 TCCTGAATCCAACGAATGGCCCAGTCTGCTTTTTTC 315207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712926227989440