Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq181 178 3e-39 seq92 174 3e-38 seq47 138 2e-27 seq1 96.9 7e-15 >seq181 Length=64741 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| ||||| || ||||| || |||||||| || |||||||||||||| Sbjct 7355 ACCACCACGCAGACGAAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCT 7414 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| || || || || || |||||||| || | ||||| |||||| || Sbjct 7415 CAGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCAGGAGG 7474 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| || || ||||| | ||| || | ||||| || || |||| |||||| Sbjct 7475 GATGCCCTCCTTATCCTGAATCTTGGATTTGACATTGTCGATGGTATCAGAAGATTCGAC 7534 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | || || ||||| || ||||| ||||| || || || ||||| Sbjct 7535 TTCCAAGGTAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 7582 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| ||||| || || |||| ||| | || || || || || |||||||| | Sbjct 7583 ACCACCCCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGA 7642 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || ||||||||||| ||||| || || |||||||| | || || |||||| || Sbjct 7643 CAAAGTTCGGCCATCCTCGAGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGG 7702 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| ||||| ||||| | ||||| ||||||| || ||||| | ||| || Sbjct 7703 AATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAGGATTCAAC 7762 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | || || ||||| || ||||||||||| ||||| |||||||| Sbjct 7763 TTCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 7810 Score = 141 bits (156), Expect = 2e-28 Identities = 169/228 (74%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | ||| ||| || ||||| |||||||| | Sbjct 7811 ACCACCACGGAGGCGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCGGA 7870 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || |||||||| || || || || || || || ||||| || || || ||| || Sbjct 7871 GAGGGTACGGCCATCTTCCAGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGGAGG 7930 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| || || ||||| | || || | ||||| ||||| || | ||||| Sbjct 7931 GATACCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGAC 7990 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || ||||||||||| || | ||| ||||| Sbjct 7991 CTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACAACTAT-TGCAT 8037 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || ||||| || || || || | || || || || |||||||| |||| Sbjct 8112 ACCACCTCGAAGGCGGAGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGA 8171 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| || || || || || ||||| | ||| || |||||| || Sbjct 8172 AAGAGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGG 8231 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || ||||| | || || | || ||||| || || | ||||| Sbjct 8232 AATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATAGTATCAGACGACTCGAC 8291 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| || ||||| || || | ||||| ||||| || ||||| Sbjct 8292 CTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 8339 >seq92 Length=104316 Score = 174 bits (192), Expect = 3e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || |||| || | ||||| || || |||||||||||||| Sbjct 34739 ACCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 34798 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||||||||| || || || || || |||||||| | ||||| ||||| || Sbjct 34799 CAGGGTGCGGCCATCTTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGG 34858 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | || || ||||| |||| || || Sbjct 34859 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 34918 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||||||||| ||||| | || || ||||| |||||||| || Sbjct 34919 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTT 34969 >seq47 Length=141222 Score = 138 bits (152), Expect = 2e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || || ||||||||||| | || || || || ||||| || || || || || |||||| Sbjct 51573 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 51632 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || |||||| ||||| ||||||||||||||||| || | || || | ||| Sbjct 51633 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCG 51692 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||| | ||||| || || ||||| ||||| ||||||| |||||| ||||| Sbjct 51693 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAA 51751 >seq1 Length=456006 Score = 96.9 bits (106), Expect = 7e-15 Identities = 164/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 230167 TCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTG--CGACGCTATTCCTTGCCGTCT 230224 |||| || | |||| | ||| | ||||| |||| ||| ||| | || || ||| Sbjct 315473 TCACCGACGCTGTTGGCATTGAGCAAGAGTT--TTTGACCGAGGCTCTGCCGTGTGCTCT 315530 Query 230225 TATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTT 230284 | |||||||| || || ||| ||||||||| ||||| || || |||||| | || Sbjct 315531 CCTAGGCATGAACGCCACACTAATGAAGCAATATATTGAATTTGTCGCCGATCGTCTATT 315590 Query 230285 CGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCT 230344 || || || || |||| || || || || || |||||||||| ||| |||||| Sbjct 315591 GGTTGCACTTGGTAACGAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAGAA 315650 Query 230345 CATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAA 230400 |||||| | || || || ||||||||||| ||||| || | || ||||||| Sbjct 315651 CATTTCCTTGGGTGGCAAGACAAACTTCTTCGAGAAGCGAGTTGGAGAATATCAAA 315706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046726901795718