Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq92 131 1e-25 seq181 125 5e-24 >seq92 Length=104316 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||| ||| || ||||||||||| ||||||||||| ||| Sbjct 34740 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 34799 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || || |||||||| || |||||||| | || ||||| || | || Sbjct 34800 AGGGTGCGGCCATCTTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGA 34859 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || ||||| ||| ||||| ||| | | | |||||||||| || |||||| Sbjct 34860 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 34919 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | || |||||||| ||||||||||| || ||||| || ||||| Sbjct 34920 TCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 34966 >seq181 Length=64741 Score = 125 bits (138), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || |||||| || ||||||||||| | || ||| |||| || Sbjct 8131 ACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCG 8190 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | ||||||||| || | || | || ||||| ||| Sbjct 8191 AGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGA 8250 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | || || || | || || ||||| | ||||| |||| Sbjct 8251 ATCTTCGACTTGACATTGT--CAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTCT 8308 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || ||||||||||| ||||||||||||||| Sbjct 8309 TGCCGGTGAGGGTCTTGACGAAGATTTGCATG 8340 Score = 120 bits (132), Expect = 2e-22 Identities = 147/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||| ||||| ||||| ||||| |||| ||| || | || ||| Sbjct 7830 ACGAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCTTCC 7889 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || || ||||| ||||||||||| | ||| | ||| ||||| ||| Sbjct 7890 AGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGA 7949 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | |||||||||| ||| || ||||| | || || |||| Sbjct 7950 ATCTTCGACTTGACATTGT--CGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCT 8007 Query 44307 TTCCCGTGAGGGTCTTCAC 44325 |||| || | ||||| || Sbjct 8008 TTCCGGTCAAAGTCTTGAC 8026 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| || || | ||||| ||||| ||||||||||| ||| || ||| |||| || Sbjct 7373 CACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTC 7432 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| |||||||| || | || ||||| || | ||| | || ||||| ||| Sbjct 7433 CAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCAGGAGGGATGCCCTCCTTATCCTG 7492 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| || || ||| | ||||| || | ||||| || |||| ||||| ||| Sbjct 7493 AATCTTGGATTTGACATTGT--CGATGGTATCAGAAGATTCGACTTCCAAGGTAATAGTC 7550 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || | |||||| || || |||||||| Sbjct 7551 TTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 7582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359986376769789