Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq92 159 8e-34 seq181 143 6e-29 >seq92 Length=104316 Score = 159 bits (176), Expect = 8e-34 Identities = 148/188 (79%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| ||||| || || ||||||||||| |||||||| || ||| Sbjct 34963 CAGATTTTCGTCAAAACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 34904 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| |||||||| || || || || |||||||||||| Sbjct 34903 ACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAA 34844 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||| || || || |||||||||||||| | || || ||| || ||| || Sbjct 34843 CGACTTATCTTTGCTGGTAAGCAGCTCGAAGATGGCCGCACCCTGAGCGACTACAACATC 34784 Query 178104 CAAAAAGA 178111 || || || Sbjct 34783 CAGAAGGA 34776 >seq181 Length=64741 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || || || |||||||| || || || Sbjct 8336 CAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTCGTCTGAT 8277 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||||||||| || ||||| || || |||||||| Sbjct 8276 ACTATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGAATTCCCCCTGACCAGCAG 8217 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| ||||| |||||||| || || | |||||| | ||||| ||| | Sbjct 8216 CGTCTAATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCTGATTACAACATT 8157 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || |||||||| || || ||| Sbjct 8156 CAGAAGGAGTCAACACTTCACCTCGTT 8130 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || | || ||||| || || ||| | || || ||| || || Sbjct 7579 CAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTCGAATCTTCTGAT 7520 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| ||||||||||| || || || |||||||| ||||||||| Sbjct 7519 ACCATCGACAATGTCAAATCCAAGATTCAGGATAAGGAGGGCATCCCTCCTGACCAGCAA 7460 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||| || |||||||| ||||| ||||| || | || || ||| || ||| || Sbjct 7459 CGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTACAACATC 7400 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||| || ||||||| || Sbjct 7399 CAGAAGGAAAGCACTTTGCATCTCGT 7374 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || ||| | || ||||| || |||||||| ||||| || ||| ||||||||||| Sbjct 8026 GTCAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGAC 7967 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || ||||| ||||||||||| || || || |||||||| || ||||| ||| | || Sbjct 7966 AATGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATT 7907 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 ||||| || || ||||| |||||||| | || || |||| || || |||| || ||| Sbjct 7906 TTCGCTGGTAAGCAGCTGGAAGATGGCCGTACCCTCTCCGACTACAATATCCAGAAGGAA 7847 Query 178113 TCAACACTGCATCTTGT 178129 || || || || || || Sbjct 7846 TCCACCCTTCACCTCGT 7830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203717057286898