Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3 127 2e-24 >seq3 Length=584709 Score = 127 bits (140), Expect = 2e-24 Identities = 320/480 (67%), Gaps = 10/480 (2%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||| || || | ||| || || ||||| ||||| || ||||| | | || || |||| Sbjct 294780 TTTGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTGCCACCCAAGGAAATGTTCT 294839 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||||||||| || || || | | | ||| || || || ||| | | | || Sbjct 294840 CCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACCAAGTGCAACCAATA 294899 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 | ||| || |||||||| |||||||| ||||| | | |||||| |||| ||| Sbjct 294900 GACGATCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGTTCATGCCTAGGAGA- 294958 Query 16854 GTAC-CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA 16912 | || ||| ||||| || |||||||| |||||| || |||| || || | || ||| Sbjct 294959 GCACACGGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAGCGTCGGTGATGATA 295018 Query 16913 --CTAGC-AACTCG-TTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGC 16968 || | || | | || || | ||||| |||||||| || ||||||||| Sbjct 295019 TCCTGGATAATTTGCTTGCTGGCTCGGTGC----TTAAGATGCGAGTGCAACAGACATGC 295074 Query 16969 GAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGG 17028 || || || || ||||| || | | ||||||||||||||| || || | ||||| Sbjct 295075 AAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGGCCGGG 295134 Query 17029 CATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACC 17088 |||| || || ||||| | ||| || |||| || || | ||| ||||| || || Sbjct 295135 CATCAGACCACGCTTCTTGAGCCAGAAAATCGACGCAAAGGCACCACTGAAGAAGATGCC 295194 Query 17089 CTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCA 17148 ||| || | || || || | || || | |||| | | | || |||| ||||||| Sbjct 295195 CTCCACAGCAGCGAAAGCCACCAAGCGCTGGGCGAAGCTGGAATCCTTGTCCTGAATCCA 295254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517529349068160