Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3 116 4e-21 >seq3 Length=584709 Score = 116 bits (128), Expect = 4e-21 Identities = 195/280 (70%), Gaps = 3/280 (1%) Strand=Plus/Plus Query 16479 TATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCAT 16538 |||| ||||| | | || |||| ||||| || ||||| || ||||| ||||||| Sbjct 295402 TATCGATCAGGAGAGAATATGTTTCAGAGTGAATATTCTCCATCATGATCTGGAATCCAT 295461 Query 16539 AGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCAT 16598 ||||||| |||||||||| | || || || || || || || || ||| |||| Sbjct 295462 AGAAGCAACGAGCCTCCGGAACCTGAACCTCGCCGCTGAAACGCTCAAGCAAGTTTTCAT 295521 Query 16599 TCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGT 16658 | || || |||||| |||||||| || |||| ||||| ||||| ||||| |||| Sbjct 295522 TGACAATGCCGTCAGAAGCAGCAAAGAATGCCAGAATGTGTGATATGAAGTATTTCTCGT 295581 Query 16659 C--AGAT-GTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCG 16715 | | | | || | | |||||| | || || ||||| | ||| | ||||| | || Sbjct 295582 CGTCGCTCAGACGATTGTTCCAATCGTGCAAGTCCTTGGACAGATCGATCTCTTCGGCCG 295641 Query 16716 TCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAAT 16755 |||| || || | ||||| |||||||||| |||||| Sbjct 295642 TCCAGAAAGAGGCTTCGGCCTTCTTATACATTTGCCAAAT 295681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511398341587840