Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq47 129 7e-25 >seq47 Length=199617 Score = 129 bits (142), Expect = 7e-25 Identities = 252/366 (69%), Gaps = 6/366 (2%) Strand=Plus/Minus Query 145866 CGCCACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCG 145924 || ||||||||| || ||| | | ||||||||||||| ||||||| | | || ||| Sbjct 127376 CGACACGTAGAATTGCGCAAAC-ACATGGCAGGGCGGCAAGGCCATGAGGTGTAGATCCC 127318 Query 145925 CCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTA 145984 | |||||| || | | || || || || | | || || ||||||||| | | Sbjct 127317 GTGCGTTCCACGCACTCATGATGATCCGCCGGTCGTACGGCTTGTTCTTGATCTTGTCAA 127258 Query 145985 TCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACG 146044 ||| ||| ||||||||| || |||| || ||| |||||||||| || | |||| Sbjct 127257 TCACGTCGGCGAGCTGGTCGACTCCCTTGCCGGTGTAGTCTGTCTTGGCATCGATGTACT 127198 Query 146045 CGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGT 146104 | || || ||||||| ||| ||||| ||||| ||||| ||||| || || || | || Sbjct 127197 CTGCGCCAAAGTGCCGCCATTGGAAGCCGTACACGGGTCCCAGATCGCCTACTTCACGGT 127138 Query 146105 GCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGC 146164 | || || | ||||||| || ||||| || ||| ||||||| || ||||||| Sbjct 127137 GTGTGAGACCCAGATTGTCGAGGAACTCGCGGGATCCATTGCCGTCCCATATTTTGACGC 127078 Query 146165 C--CCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTC 146222 | | | || ||| || || | ||| ||| ||| ||||||||| || || || | Sbjct 127077 CGGCGTTGCTGAGGGC-CAGT-GAGGAGGTGTTGCCCTCGATGAACCATAGTAGTTCGGC 127020 Query 146223 GAGGAC 146228 || ||| Sbjct 127019 GATGAC 127014 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 145704 GTAGACGTGCGCGTCCCCCAGGACGTGGATGAAG-TCCCCGGGCTCGAGGCCCGTGAGGT 145762 ||||||||||||||| |||| ||||||| ||| | | || ||| | | | | | | Sbjct 127619 GTAGACGTGCGCGTCGCCCATGACGTGGGTGAGGCTGCCGGGGACCAAATCGCACGCA-T 127561 Query 145763 GGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCA 145822 | |||| ||||| || || || | |||||| || |||||||||||||| ||||| |||| Sbjct 127560 GTGCGATCATGTGCGTGAGGAGTGCGTAGCTAGCGATGTTGAAGGGCACGCCCAGGCCCA 127501 Query 145823 TGTCCCCCGAGCGCTGGTACAGCTGGCAG 145851 |||| | || || ||||||| || ||| Sbjct 127500 TGTCGCATGATCGTTGGTACAATTGACAG 127472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590058271588480