Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5 159 4e-34 seq3 131 2e-25 seq36 114 1e-20 seq9 109 6e-19 >seq5 Length=531522 Score = 159 bits (176), Expect = 4e-34 Identities = 169/220 (77%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| |||||||| || || |||||| | || || || | Sbjct 177345 AAGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 177286 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||| ||| |||| Sbjct 177285 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 177227 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||||||||||||||| || || || ||||| || || | |||||||| | |||||| Sbjct 177226 CCAGCAACGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 177167 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||||||||| ||| ||||| | ||| ||||| Sbjct 177166 CAACATCCAGAAGGAGAGCACCCTGCACTTGGTGCTGCGC 177127 >seq3 Length=584709 Score = 131 bits (144), Expect = 2e-25 Identities = 232/331 (70%), Gaps = 8/331 (2%) Strand=Plus/Minus Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTT--TCGGGCAGT 117085 ||||| | ||||| ||||||| ||||| || || |||||| ||||||| | | || | Sbjct 295231 CTTCGCCCAGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGTGGTGCCTT 295172 Query 117086 TTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAAC 117145 | || || || || ||||||||||| || || || ||||||||||| || ||| ||| Sbjct 295171 TGCGTCG--ATTTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAAC 295114 Query 117146 GAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCAT 117205 || || |||||| | || |||||| |||| |||||||| ||| || || | |||| Sbjct 295113 GAACTTATCTCCCGTGATGAGGGTTTGCACACAGACTTTGCATGTCTGTTGCACTCGCAT 295054 Query 117206 TTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATC 117265 | ||| ||| | ||| | || ||| ||| |||||||||| || | ||| Sbjct 295053 CTTAAGCACCGAGCCAGCAAGCAAATTATCCAGGATATCATCACCGACGCTGTTGGCATT 294994 Query 117266 GAGCAGCGCTTCCTCACCGAAGCGCTGCCG-GTGCGTCTGCTGGGACTCAATTGCGAAAC 117324 ||||| || | ||||| || |||||| |||| ||| || || | || || | || Sbjct 294993 GAGCAAGAGTTTTTGACCGAGGCTCTGCCGTGTGC-TCTCCTAGGCATGAA-CGCCACAC 294936 Query 117325 -GATGTCGCAATACATCGAGTTCGTCGCCGA 117354 ||| |||||| || || || |||||||| Sbjct 294935 TAATGAAGCAATATATTGAATTTGTCGCCGA 294905 Score = 131 bits (144), Expect = 2e-25 Identities = 196/278 (71%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| ||||| || |||||||| || || |||||||| | ||| ||| | || ||| Sbjct 295681 ATTTGGCAAATGTATAAGAAGGCCGAAGCCTCTTTCTGGACGGCCGAAGAGATCGATCTG 295622 Query 116696 TCCAAGGACACGAGCGACTGG---GAGCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| | ||| ||| | || ||| |||| ||||| | ||||| Sbjct 295621 TCCAAGGACTTGCACGATTGGAACAATCGTCTGAGCGACGACGAGAAATACTTCATATCA 295562 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | ||||| || || || || |||||||| ||||| || || || | |||||| Sbjct 295561 CACATTCTGGCATTCTTTGCTGCTTCTGACGGCATTGTCAATGAAAACTTGCTTGAGCGT 295502 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| ||||| | ||||| || |||||||| || || |||||| ||| Sbjct 295501 TTCAGCGGCGAGGTTCAGGTTCCGGAGGCTCGTTGCTTCTATGGATTCCAGATCATGATG 295442 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGA 116910 ||||| | ||||| |||| ||||| ||| ||||| Sbjct 295441 GAGAATATTCACTCTGAAACATATTCTCTCCTGATCGA 295404 >seq36 Length=226857 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| | || ||||| || | |||| | Sbjct 82795 TTCGTCAAGACTCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACGATC 82854 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| ||||| | ||||| |||||||| ||| | || ||||| ||| | Sbjct 82855 GACAATGTCAAGTCCAAAATCCAAGACAAGGAGGGCATTCCCCCTGATCAGCAGCGATTG 82914 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || |||| || ||||| |||||||||||| |||||| Sbjct 82915 ATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTCCGACTACAACATTCAGAAG 82974 Query 40879 G 40879 | Sbjct 82975 G 82975 >seq9 Length=455495 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || || || || || ||| | || |||||| | | Sbjct 294778 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTCGAATCTTCT 294837 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| || |||| || || ||||| ||||| | |||||| Sbjct 294838 GATACCATCGACAATGTCAAATCTAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCAG 294897 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||||||| || | || || || |||||||| |||| ||||| || | |||||||||| Sbjct 294898 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTACAAC 294957 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||| ||| ||||||| ||| Sbjct 294958 ATCCAGAAGGAAAGCACTTTGCATCTCGTG 294987 Score = 104 bits (114), Expect = 2e-17 Identities = 149/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||| || | || || || | || || || ||||||||| | || ||||| || || Sbjct 294323 ATGCAA-TAGTTGTCAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTCGAGTCCTCC 294381 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || |||| || || ||||| ||||| | || ||| Sbjct 294382 GACACCATCGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCTCCTGATCAG 294441 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | || | ||| || || |||||||| || | || |||||| ||||||||| Sbjct 294442 CAGCGATTGATTTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACCCTCTCCGACTACAAT 294501 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| |||| || || || || Sbjct 294502 ATCCAGAAGGAATCCACCCTTCACCTCGT 294530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515203022117120