Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq9 105 1e-17 >seq9 Length=455495 Score = 105 bits (116), Expect = 1e-17 Identities = 166/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || ||||| ||||| || | || ||||| | Sbjct 294550 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTTGAATCCTCG 294609 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || |||| |||| || ||||||||||| ||||| || || ||||| || Sbjct 294610 GATACGATCGATAATGTAAAGTCTAAGATTCAAGATAAGGAAGGCATTCCCCCTGACCAG 294669 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || || || | |||||| | ||||| || || || ||| Sbjct 294670 CAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAAT 294729 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| || || || ||| ||||||| || | ||| | || |||||||| ||| || Sbjct 294730 ATTCAGAAGGAGTCTACTCTGCATTTAGTCCTGCGTCTGCGGGGTGGTATGCAAATTT 294787 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| | || || || ||||| || | || | ||| | | Sbjct 294778 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTCGAATCTTCT 294837 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| || ||||| ||||| || ||||| || ||||| || Sbjct 294838 GATACCATCGACAATGTCAAATCTAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCAG 294897 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | ||||||||||| ||||| || | || || | || || | || || || Sbjct 294898 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTACAAC 294957 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || || || ||| ||||||||| | || | ||| | ||||||||| Sbjct 294958 ATCCAGAAGGAAAGCACTTTGCATCTCGTGCTTCGTCTGCGAGGTGGT 295005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755432278681600