Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq5 127 2e-24 seq36 116 3e-21 seq9 114 1e-20 >seq5 Length=531522 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | || ||| || || |||||||| ||||||| ||||| ||| Sbjct 177130 CAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATC 177189 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||| || ||||| ||||||| || ||||| || || || |||||||||||||| Sbjct 177190 CTCGAGCTGCTTACCAGCAAAGATGAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTC 177249 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| |||||| | ||| ||||| | ||| | ||| Sbjct 177250 CTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGT 177309 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||| || ||||||||||| Sbjct 177310 CTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 177342 >seq36 Length=226857 Score = 116 bits (128), Expect = 3e-21 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || ||||||||||| ||| || || || ||||| ||||| || |||||| |||| Sbjct 82973 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 82914 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | ||||||||||| || || ||||||||||||||| ||||| || || | ||| Sbjct 82913 AATCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCG 82854 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||||| | ||||||||| | ||| | || ||||| |||||||| || || ||| Sbjct 82853 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAAA 82794 Query 118731 ATCTGCATGGCTTATT 118746 ||| |||| |||| Sbjct 82793 --CTGAATGGTGTATT 82780 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 133613 AACAAACGCGTCGGCCAAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCT 133672 || ||| |||||||| | |||||| | || || ||||||||||||||| | ||||| Sbjct 155796 AAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCT 155737 Query 133673 CCTCTCCGACTCGGCCGTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGAC 133732 | | ||| | |||| || |||||||| ||||||||||||||||| || ||||| Sbjct 155736 GTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCGATGATCTTGTTGAGGTTACGGAC 155677 Query 133733 GATAATTTTAGTCA 133746 || | || ||||| Sbjct 155676 GACCACTTGAGTCA 155663 >seq9 Length=455495 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||| | ||| ||||| || |||||||||||||| | |||||| ||||||||||| Sbjct 294224 GTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTG 294165 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||||||||| |||| ||||||||||| || || || || || |||||||| ||| || Sbjct 294164 CTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGAATCTT 294105 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | || || | ||||||||||| || | || |||||||| Sbjct 294104 CGACTTGACATTGTCAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGT 294045 Query 118715 CAGAGTTTTTACAAAAATCTGCATGG 118740 || || || || || || ||||||| Sbjct 294044 GAGGGTCTTGACGAAGATTTGCATGG 294019 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || ||||| ||||| ||| || ||| || |||||||||||| || ||| Sbjct 294746 GTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCATCCTCGAGCTGCTTACCA 294687 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || ||||||| |||||||| || || || ||||| ||||| ||| ||| || || Sbjct 294686 GCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGAATCTTAGACTTT 294627 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| || |||| | || || || | || | || ||||| |||| ||| Sbjct 294626 ACATTATCGATCGTATCCGAGGATTCAACTTCCAATGTAATAGTCTTGCCAGTCAAAGTC 294567 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 294566 TTGACGAAGATCTGCAT 294550 Score = 86.0 bits (94), Expect = 5e-12 Identities = 138/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || || ||||| ||| | || || ||| || ||||| || ||| Sbjct 294518 GTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCTTCCAGCTGCTTACCA 294459 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || | ||||||||||| ||||| || |||||||| || ||| || || Sbjct 294458 GCGAAAATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGAATCTTCGACTTG 294399 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| | | ||||||||| | ||| | || || ||||||| ||| Sbjct 294398 ACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTC 294339 Query 118722 TTTACAAAAATCTGCAT 118738 || |||| || ||||| Sbjct 294338 TTGACAACTAT-TGCAT 294323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433817118282304