Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq5 122 1e-22 seq9 111 2e-19 >seq5 Length=531522 Score = 122 bits (134), Expect = 1e-22 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| |||||| |||| ||||||||||| || || ||||| || ||| || || | Sbjct 177128 CGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 177187 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||||||||| || |||||||| |||||||| | || | || ||||||| Sbjct 177188 TCCTCGAGCTGCTTACCAGCAAAGATGAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTG 177247 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| || |||| ||| | | | |||||| || ||||| || | ||||| Sbjct 177248 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 177306 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || || ||||| || || || || || || ||||| || Sbjct 177307 CGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTT 177345 >seq9 Length=455495 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| |||||||||| ||||| || |||| || |||||||| |||||||| Sbjct 294212 CTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAA 294153 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || ||||||||||| | || | | ||||||||| ||| | || | |||| Sbjct 294152 GATTAGACGCTGCTGGTCAGGGGGGATTCCTTCCTTGTCC-TGAATCTTCGACTTGACAT 294094 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || || ||| || || |||| || ||||| ||||| || || ||||| | Sbjct 294093 TGTCAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGA 294034 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 294033 CGAAGATTTGCAT 294021 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| || ||||||| || |||||| ||||||||||| || | || ||| || | Sbjct 294765 ACGCAGGACTAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCC 294706 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||||||||| || ||||||||||||||||| | || | || ||||| Sbjct 294705 ATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTT 294646 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 | | ||| | || | || | | | | ||| || ||||| || || | || | Sbjct 294645 AT-CTTGAATCTTAGACTTTACATTATCGATCGTATCCGAGGATTCAACTTCCAATGTAA 294587 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || ||||| || | ||||| || ||||| ||||| Sbjct 294586 TAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 294550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571799644927360