Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3 84.2 2e-11 >seq3 Length=584709 Score = 84.2 bits (92), Expect = 2e-11 Identities = 190/281 (68%), Gaps = 5/281 (2%) Strand=Plus/Plus Query 16512 TATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCAT 16571 |||| || || | | ||| |||| || |||||||||||||| ||||| || |||| Sbjct 295402 TATCGATCAGGAGAGAATATGTTTCAGAGTGAATATTCTCCATCATGATCTGGAATCCAT 295461 Query 16572 AAAAGCATCTAGCTTCGGATATTTGTACTTCAGAG-TAAAACCTTTCTGCTAAGTTTTCG 16630 | ||||| | ||| || | | || || || | | |||| | || |||||||| Sbjct 295462 AGAAGCAACGAGCCTCCGGAACCTGAACCTCGCCGCTGAAACGCTCAAGC-AAGTTTTCA 295520 Query 16631 TTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCG 16690 || || || || || ||| ||||| || || || |||||| || || | ||| ||| Sbjct 295521 TTGACAATGCCGTCAGAAGCAGCAAAGAATGCCAGAATGTGTGATATGAAGTATTTCTCG 295580 Query 16691 T--TATCTGA-AAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACA 16747 | | || | | | || ||| || || || || || | ||||| |||||| | Sbjct 295581 TCGTCGCTCAGACGATTGTTCCAATCGTGCAAGTCCTTGGACAGATCGATCTCTTCGGCC 295640 Query 16748 GTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATAT 16788 ||||| ||||| || | ||||| |||||||||| ||| || Sbjct 295641 GTCCAGAAAGAGGCTTCGGCCTTCTTATACATTTGCCAAAT 295681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462497477123200