Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq36 125 2e-23 >seq36 Length=226857 Score = 125 bits (138), Expect = 2e-23 Identities = 431/667 (65%), Gaps = 19/667 (3%) Strand=Plus/Plus Query 248782 CTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACG 248841 || ||| ||| || | ||||| || ||| || | || | | ||||| ||||| || Sbjct 154645 CTTGACTCCGCCATCGTCTACGACAGAGACTTCAACTATCAATACTTTGGCTTCAAGACT 154704 Query 248842 CTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATG 248901 ||||||| ||| ||||| |||||| | | ||||||||||| || ||| |||||||||| Sbjct 154705 CTGGAGAGATCATATCTTCTCAAACTCAACGGCAAGATCGTCGAGCGACCTCAGCACATG 154764 Query 248902 TTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTAC 248961 | ||||| || || ||||| ||| || |||| || |||| | ||||| ||| Sbjct 154765 ATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATCGAACGCGTTTTGGAGACTTAC 154824 Query 248962 ACCGGAATG---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGT 249018 | ||| || | | || | || || ||| |||| || ||||||||||| ||| Sbjct 154825 CACCTCATGTCCAGCAAGCTCT---TCACCCACGCCTCACCTACACTCTTCAACGCTGGT 154881 Query 249019 ACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGAC 249078 ||| | | ||||||| || || || || ||| |||| | |||||| | ||| Sbjct 154882 ACCCCCCAATGTCAGCTGTCTTCCTGTTTCCTAGTTGACATGAAGGACGACAGCATTGAC 154941 Query 249079 GGCATTTATGACACGCTTAAACAGAC---GGCGAAGATTTCTAAATTCGCGGGCGGAATC 249135 || || || ||||| || | |||| || | ||| || || | || || || ||| Sbjct 154942 GGTATCTACGACACTCTCA---AGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATC 154998 Query 249136 GGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTC 249195 || | |||| | |||||| || | || || ||||| || || || || Sbjct 154999 GGCTTGAACGTCCACCGCATCCGTGCCACCGGCTCTTACATTGCCGGCACCAACGGTACA 155058 Query 249196 AGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAG 249255 | || ||| | ||| | ||||| ||| | ||| ||||| | | | ||||| Sbjct 155059 TCCAACGGCATCATTCCCATGCTTCGCGTCTTCAACAACACTGCCAGATACGTTGACCAG 155118 Query 249256 GCCGG---GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATA 249312 | ||| ||| || | || || || || | || |||||||| || | Sbjct 155119 GGCGGCAATAAGCGACCTGGTGCATTTGCTATCTACCTCGAGCCTTGGCACGCAGACGTG 155178 Query 249313 TTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTC 249372 || || || || || ||| ||||||| ||||||| || | | || || |||||| Sbjct 155179 TTTGACTTTCTTGATTTGCGAAAGAACCACGGCAAGGAAGAAAACCGTGCTCGCGACCTC 155238 Query 249373 TTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTC--AAGGCCGACGGCGATT 249430 ||| | |||||| || | || | |||||| |||||| |||| |||| |||| Sbjct 155239 TTCCTTGCTCTGTGGATCCCAGATCTTTTCATGAAGCGCGTCGAAAGG--AACGGGGATT 155296 Query 249431 GGACGCT 249437 |||| || Sbjct 155297 GGACCCT 155303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073731840828416