Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq36 394 8e-105 seq9 116 3e-21 >seq36 Length=226857 Score = 394 bits (436), Expect = 8e-105 Identities = 1212/1853 (65%), Gaps = 48/1853 (3%) Strand=Plus/Minus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 ||||| | || |||||||||||||| ||||||| |||||| | ||| || || || Sbjct 156479 GTGCGCAAGTAGTACATGCCCGTCTTGAGACCCAACTTCCAGCCAGCAAAGTGCATAGAG 156420 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || | | || | ||||| || |||| |||||| ||| |||||| Sbjct 156419 GTGATCTTGCCCATAGTAGGATCCTTCATGTGAACGTTGAGCGACTGGGACTGGTCGATA 156360 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCA-ATGTACGCATCGACATTTCCCATACGGT 22323 || || || |||||||||||||| | || | ||| |||| || || ||||| || || Sbjct 156359 AAAGCACCGCGATCGGCGGCCATCTGGATAACATG-ACGCTGAGAAATCTCCCAAACAGT 156301 Query 22324 CTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCG--ATCCTCTGGACGGACCCGTTA 22381 |||||| || | |||| || || || ||| | || |||| | ||| ||||| Sbjct 156300 CTTGTAGAGAGCCTTGATGTCGGCGGGGAT--ATTGGGAATGTTCTGAATGGAACCGTTC 156243 Query 22382 TTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTG 22441 | | ||||| || || || | ||| ||| | ||| || || | ||| ||| Sbjct 156242 TCGGCAATGATGCGGTTCTTCATGGCATCAGACCAAAGACCCATATCGACGAGATCCTTG 156183 Query 22442 ACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTG 22501 | || |||| || || || || || || | |||||| ||||| |||||||||||| Sbjct 156182 AGGAGCCAGGGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTG 156123 Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| | || || || | |||||||| ||||| || || | ||| || ||||| ||| Sbjct 156122 GACGTGTATGGCTCAAAGCACTCATTGTTACCCAGGATTTGCGAGGTAGAGGCGGTGGGC 156063 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTC-TTGAGC 22618 || || || | ||| | |||||| | | ||||||| |||| | | ||| || | Sbjct 156062 ATGGGAGCGAGCAGCAACGAGTTGCGAATACCGTGCTGCTTGA---TCTGCTCCTTCAAG 156006 Query 22619 ATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACG 22678 | ||| ||||||| || || ||| | ||||| |||||| ||| | || | || Sbjct 156005 TTGTCCCACTCCCACAACTCAGAAGGCTTGACATT---CCACATGTCGAACTGAAGAACA 155949 Query 22679 CCG--CGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTT 22736 || ||| || || ||| | | | || ||| || || | ||| || | Sbjct 155948 CCTTCCGAGGCG--GGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCT 155891 Query 22737 CGCAGCTCGCCTC-CAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTC- 22794 | || | || || || ||| || || |||||||| |||| |||||| | || Sbjct 155890 CA-AGAGAGGCTGTCAGGGCAGCGTGGTAAATGGTCTCGAAAATTTGCTTGTTGAGCTCA 155832 Query 22795 --GGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAAC-GCGTCCGCCATACC 22851 ||| ||| || || || | ||||| |||| | || ||| ||||| || | ||| Sbjct 155831 CGGGCCTCGG-GAGACT--CGAAGGGCATGCGCAG-AGCAAGAAAAGCGTCGGCAAGACC 155776 Query 22852 CTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC----CTCGGGCA 22907 |||||| || | |||||| ||||| | | || || || |||| ||| | Sbjct 155775 CTGAACACCAACACCGATGGGTCGATGTCGCATGTTG----CTGTTGCGAGCCTCCTCAA 155720 Query 22908 AAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNN 22967 || || || |||||| | |||| | ||| | | || | || || | Sbjct 155719 TGGGGTAATGGTTGACATCGATGATCTTGTTGAGGTTACGGACGACCACTTGAGTCACCT 155660 Query 22968 NNNNNNNNNNNTCAAAGTCGTAAACGCCCGATT-GTA--CAACAAACTTGTTGACGGCGA 23024 | |||||||| ||| || ||| | || || | ||| | Sbjct 155659 CGTGGAGCTTCTGGAAGTCGTAGCGGCCTTCTTTGTAGTCGACGAAGGCAGGCAGGGCAA 155600 Query 23025 TCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTAC 23084 ||||| | ||||| || || ||||| || || |||||| | || || || | Sbjct 155599 GAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGC 155540 Query 23085 ATAGATT---GCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACG 23141 | ||||| ||| | || || |||| ||| |||||||||| || | ||||| | Sbjct 155539 ACAGATTAGAGCTGCGA---ATGGTTCCCAGATTTTTCTGGTTGCTCTTCCTGTTGCAGG 155483 Query 23142 AATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCC 23201 ||| ||||| ||||| | || ||||||| ||| ||| | ||||| ||| | || Sbjct 155482 CATCTTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGCCTCGAGGATGGAGTACC 155423 Query 23202 ACATAGTCTGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTAC 23260 | | |||| || ||| | ||| || | | ||| || ||| ||||| | ||| Sbjct 155422 AGAGCTTCTGGGCACGAATA-GTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAG 155364 Query 23261 AACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATG 23320 | || ||||| || | || || || || |||||||| || | | | ||||||||| Sbjct 155363 AGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATG 155304 Query 23321 AGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCG 23380 || |||| || |||| ||||| |||| |||||||| || ||||| ||||| Sbjct 155303 AGGGTCCAATCCCCGTTCCTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCA 155244 Query 23381 TAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAG 23440 ||| || ||||| || || || || |||||| ||||||| |||||| | |||| Sbjct 155243 AGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAG 155184 Query 23441 TCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTG 23500 || |||||||| || ||||| ||||||||||| | ||||| || || |||| ||||||| Sbjct 155183 TCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATAGCAAATGCACCAGGTCGCTTATTG 155124 Query 23501 CCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCG 23560 |||||||| || ||||| | ||| ||||||||| | || | ||||| || | || ||| Sbjct 155123 CCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCG 155064 Query 23561 TTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGG 23620 ||||| | ||| ||| || | || || | || || | | ||| |||| Sbjct 155063 TTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTC 155004 Query 23621 AAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATG 23680 || || || || || || || || ||||| || || || |||||||||||||| Sbjct 155003 AAGCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATA 154944 Query 23681 CCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGC 23740 || || |||||||| || || | | || | |||||| ||||||| || || ||| Sbjct 154943 CCGTCAATGCTGTCGTCCTTCATGTCAACTAGGAAACAGGAAGACAGCTGACATTGGGGG 154884 Query 23741 GTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTG 23800 ||| | || ||| ||||| || |||||| || ||| | ||||| || | | Sbjct 154883 GTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGG 154824 Query 23801 TACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATC 23860 || || || | || || |||| ||||| ||||||| || |||||||| ||| Sbjct 154823 TAAGTCTCCAAAACGCGTTCGATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATC 154764 Query 23861 ATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATC 23920 |||| ||||||| |||||| | |||||| | ||||| |||||||| | | || Sbjct 154763 ATGTGCTGAGGTCGCTCGACGATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGA 154704 Query 23921 GTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || || || ||||| || | |||||| ||||| | |||| || ||||| || Sbjct 154703 GTCTTGAAGCCAAAGTATTGATAGTTGAAGTCTCTGTCGTAGACGATGGCGGA 154651 Score = 86.0 bits (94), Expect = 6e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260 |||||| ||||||||||| ||||| || |||||| | || || || | || |||| | Sbjct 82794 TTTCGTCAAGACTCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACGAT 82853 Query 31261 CGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCT 31320 ||| | ||||| | ||| |||||||| ||| | || || || |||||||| | Sbjct 82854 CGACAATGTCAAGTCCAAAATCCAAGACAAGGAGGGCATTCCCCCTGATCAGCAGCGATT 82913 Query 31321 AATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAA 31380 || ||||||||||| ||| | || ||| | || || ||| || |||||||| || Sbjct 82914 GATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTCCGACTACAACATTCAGAA 82973 >seq9 Length=455495 Score = 116 bits (128), Expect = 3e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 31181 ATTGAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGAC 31240 || ||| ||| ||||||||| ||||| ||||| || || ||||| || || || |||| Sbjct 294009 ATCGAAGCAACCATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAG 294068 Query 31241 GTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTG 31300 || || |||| || | | | || | ||||| || || |||||||||||| | Sbjct 294069 GTCGAGTCGTCTGATACTATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAAGGAATC 294128 Query 31301 CCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATG 31360 || || ||||||||||||||||| |||||||| || ||| | || ||| ||| | Sbjct 294129 CCCCCTGACCAGCAGCGTCTAATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACTCTT 294188 Query 31361 AGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| |||||||| || || || || ||||| || || || Sbjct 294189 TCTGATTACAACATTCAGAAGGAGTCAACACTTCACCTCGTTCT 294232 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| |||| || || || || ||| | || || ||| | || Sbjct 294778 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTCGAATCTTCT 294837 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | |||||| | || ||| ||||| || | || || |||||| Sbjct 294838 GATACCATCGACAATGTCAAATCTAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCAG 294897 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || || || || || ||| |||||||| || ||||||| || ||| Sbjct 294898 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTACAAC 294957 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || ||| ||| | ||||| || ||| | ||| | || ||| Sbjct 294958 ATCCAGAAGGAAAGCACTTTGCATCTCGTGCTTCGTCTGCGAGGTGGT 295005 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||| |||| ||||| || || || | || |||||| | || Sbjct 294550 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTTGAATCCTCG 294609 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | || || ||||||||| | || || |||||| Sbjct 294610 GATACGATCGATAATGTAAAGTCTAAGATTCAAGATAAGGAAGGCATTCCCCCTGACCAG 294669 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || ||||| || ||| | || || ||| || ||| || || Sbjct 294670 CAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAAT 294729 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || ||||| ||| | || || | ||| |||| |||| Sbjct 294730 ATTCAGAAGGAGTCTACTCTGCATTTAGTCCTGCGTCTGCGGGGTGGTA 294778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445752402935040