Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq3 120 6e-22 seq36 96.9 7e-15 >seq3 Length=584709 Score = 120 bits (132), Expect = 6e-22 Identities = 296/444 (67%), Gaps = 10/444 (2%) Strand=Plus/Minus Query 101916 TTGTTGCCTTT-GCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTC 101974 ||| || |||| ||||| || || || |||||||| |||||||| || || || |||||| Sbjct 295218 TTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGTGGTGCCTTTGCGTCGATTTTC 295159 Query 101975 TGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGG 102034 ||| ||||||| | ||| | |||| || ||||||| ||| || || | || || | Sbjct 295158 TGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAACGAACTTATCTCCCGT 295099 Query 102035 GACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC 102094 || || ||| | || ||||||||||| |||||| | | | | | ||| Sbjct 295098 GATGAGGGTTTGCACACAGACTTTGCATG---TCTGTTGCACTCGCATCT--TAAGCACC 295044 Query 102095 ---CCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151 ||| |||| ||| || | || || |||| || || || | ||||| ||||| Sbjct 295043 GAGCCAGCAAG-CAAATTATCCAGGATATCATCACCGACGCTGTTGGCATTGAGCAAGAG 294985 Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211 ||| | || | | ||||| | | | || |||||| || | |||| || Sbjct 294984 TTTTTGACCGAGGCTCTGCCGTGTGCTCTCCTAGGCATGAACGCCACACTAATGAAGCAA 294925 Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAAT 102271 || ||||||||||| || ||| |||||||||| | | || |||||| || || Sbjct 294924 TATATTGAATTTGTCGCCGATCGTCTATTGGTTGCACTTGGTAACGAAAAGGTATACAAA 294865 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 ||||||||||| |||||||| || |||||| | | ||||| ||||| || Sbjct 294864 ACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCAAGACAAACTTCTTC 294805 Query 102332 GAAAAGAGAGTCGCCGAGTATCAA 102355 || ||| |||| | || |||||| Sbjct 294804 GAGAAGCGAGTTGGAGAATATCAA 294781 >seq36 Length=226857 Score = 96.9 bits (106), Expect = 7e-15 Identities = 418/653 (64%), Gaps = 16/653 (2%) Strand=Plus/Minus Query 94398 GCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAG 94457 ||| ||| |||||| |||||||| | |||| |||||| ||||||| | || | || Sbjct 155388 GCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAG 155329 Query 94458 GCCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTT--CACTCTCTCC 94515 |||||||||||||| ||| ||||| |||| ||||| | || |||| || | || | Sbjct 155328 GCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCC--CCGTTCCTTTCGACGCGCTTC 155271 Query 94516 ATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAATCTTCATTA 94575 ||||| ||||| | | ||| | ||| |||| || || | | | ||||| || Sbjct 155270 ATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTG 155211 Query 94576 CCGGCATTCTTTCTGCAGTCAATAAAGTCCTTCACGTCCAGATGCCAATCAGAAATATAG 94635 ||| ||||||| | |||| |||||| |||||| |||||| | ||| Sbjct 155210 CCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAG 155151 Query 94636 ATGGC---TGCAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAGAGACG 94692 || || |||| | || | | ||| || |||||| ||| | | | ||| | | Sbjct 155150 ATAGCAAATGCACCAGGTCGCTTATTG---CCGCCCTGGTCAACGTATCTGGCAGTGTTG 155094 Query 94693 TTAAAGATTTGGAGGAACGCCATGAGACCAGGGTGG--GTACCACTCCATGAC-GAAATG 94749 || |||| | || | | |||| || | ||| ||||| | || | | |||| Sbjct 155093 TTGAAGACGCGAAGCATGGGAATGATGCC--GTTGGATGTACC-GTTGGTGCCGGCAATG 155037 Query 94750 GGGCTTCCTTTTGCCCTCAAATCATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAG 94809 || | || | | || | || | ||||| || ||||| |||||||| Sbjct 155036 TAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAG 154977 Query 94810 ATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCC 94869 || || || ||| ||||| || || ||||| |||||||| || || | | | | Sbjct 154976 ATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCA 154917 Query 94870 AGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACAATTAAACAGTGTGGGGGAA 94929 | ||||| || || || || || | | || ||| || || ||||| || || Sbjct 154916 ACTAGGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAG 154857 Query 94930 GCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCT 94989 || ||||| || | || |||||||| | || || || | || || ||||| Sbjct 154856 GCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAAGTCTCCAAAACGCGTTCGATGTTG 154797 Query 94990 GATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042 ||| ||| ||||| || || ||||||||||||| |||||| ||||| || Sbjct 154796 TCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGAGGTCGCTCGAC 154744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989552150238960