Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5 109 5e-19 seq9 89.7 5e-13 >seq5 Length=531522 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || ||||| | || ||| || || ||||| || ||||||| |||| Sbjct 177128 CGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 177187 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || |||||||| ||||||||| |||| || |||||||| || || || ||||| || ||| Sbjct 177188 TCCTCGAGCTGCTTACCAGCAAAGATGAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTG 177247 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||||| | ||||||||||| ||| | | Sbjct 177248 TCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATC 177307 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || | ||||| ||||| || ||||| Sbjct 177308 GTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 177342 >seq9 Length=455495 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | || | ||| | ||||| || ||||| || |||||||| ||||| Sbjct 294247 CCACCTCGAAGGCGGAGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAA 294188 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| |||||||| || ||||| |||| ||||| ||||| || || || Sbjct 294187 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGG 294128 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACT-GTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | || | | || | || || | | ||| || Sbjct 294127 ATTCCTTCCTTGTCC-TGAATCTTCGACTTGACATTGTCAATAGTATCAGACGACTCGAC 294069 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||||||||| | || || ||||| |||||||| Sbjct 294068 CTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 294021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496048423590400