Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq36 145 1e-29 >seq36 Length=226857 Score = 145 bits (160), Expect = 1e-29 Identities = 1093/1732 (63%), Gaps = 52/1732 (3%) Strand=Plus/Minus Query 79051 GGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATAT 79110 || || || || || ||||| |||| ||| || | || |||||| || || ||| Sbjct 156173 GGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTAT 156114 Query 79111 GGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCC 79170 || || | | ||||| || |||| ||||| | || || || || ||||| || || Sbjct 156113 GGCTCAAAGCACTCATTGTTACCCAGGATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCG 156054 Query 79171 ACCAATAAACTATTTCTAAGACCGTA-TGATCTGATTTTATCTTTTAGAGAT-TCCCAAT 79228 | || || || | || ||||| || | |||| | || || | || | ||||| | Sbjct 156053 AGCAGCAACGAGTTGCGAATACCGTGCTGCT-TGATCTGCTCCTTCA-AGTTGTCCCACT 155996 Query 79229 CCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAG-CG 79287 |||| | ||||| || |||||||| | || | || |||| ||| || | || || Sbjct 155995 CCCACAACTCAGAAGGCTTGACATTCCACATGTCGAACTGAAGAACACC-TTCCGAGGCG 155937 Query 79288 TATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCT 79347 || || || | || || || |||| || || ||| | ||| | || Sbjct 155936 GGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTC 155877 Query 79348 AATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTA 79407 | || ||| |||||||| |||||||| | ||| ||||| || | || || | Sbjct 155876 AGGGCAGCGTGGTAAATGGTCTCGAAAATTTGCTTGTTGAGCTCACGGGCCTCGGGAGAC 155817 Query 79408 TCAAATGGATAATTTAAGAG-AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGAT 79466 || || || | |||| || ||| ||||| || | || |||||||||| |||||| Sbjct 155816 TCGAAGGGC-ATGCGCAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGAT 155758 Query 79467 AGGTCTATGTCTCTTATTAGAAATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTA 79525 |||| ||||| | | || | || | ||| || ||| || |||| || | ||| | Sbjct 155757 GGGTCGATGTCGCATGTT-GCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCGA 155699 Query 79526 TAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAA 79585 | || || ||||| || | ||| | |||| ||| || | || || | || || Sbjct 155698 TGATCTTGTTGAGGTTACGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGT 155639 Query 79586 ATCGTCCATCTATT------ACAAA--CATGTTCAACGCGACAGATGCCAGATTACAAAC 79637 | || || ||| | || || || | || || | ||| |||| || ||||| Sbjct 155638 AGCGGCCTTCTTTGTAGTCGACGAAGGCAGG--CAGGGCAAGAGAGGCCAAGTTGCAAAC 155581 Query 79638 GGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAAT 79697 || ||||||| || | || | || || || ||||| || ||| | ||| Sbjct 155580 AGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGATTAGAGCTGCGAAT 155521 Query 79698 GGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGG 79757 |||||| | ||||| || || ||||| |||| || ||||| || || || || || || Sbjct 155520 GGTTCCCAGATTTTTCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTACAGCATAAAGGG 155461 Query 79758 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTAT 79817 | || ||||| |||| | || | || | | ||||| | || | | | || Sbjct 155460 GTTGCCCGTTTCGGTCTGGGCCTCGAGGATGGAGTACCAGA-GCTTCTGGGCACGA--AT 155404 Query 79818 AGACTTGTATCTCTTT---TCTCTTTCGTA-TTGT-GTATATAATCGTTCGAACTCGTCT 79872 || |||| | || | || || || | ||| | | | || ||||| || Sbjct 155403 AGTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCC--TCAAACTCCTCG 155346 Query 79873 CCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCA 79932 || | ||| | | ||||| || |||| |||||||| | | ||| || || | Sbjct 155345 CCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGT-- 155288 Query 79933 TCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGG 79990 |||||| || || ||||| || ||||| || ||||| ||||| | || || || | | Sbjct 155287 TCCTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAG 155228 Query 79991 TTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 80050 | | || || || || |||||| | ||| || || | | | || | | Sbjct 155227 CACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGT 155168 Query 80051 GCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGT 80110 |||| || || | ||| || || | | || ||||| || || || ||||| || | || Sbjct 155167 GCCAAGGCTCGAGGTAGATAGCAAATGCACCAGGTCGCTTATTGCCGCCCTGGTCAACGT 155108 Query 80111 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGG 80170 |||| || ||||| || | || | | ||| ||||| || || ||||||||||| |||| Sbjct 155107 ATCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGG 155048 Query 80171 TCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCC 80228 | |||| || || || ||||||| || | || | || || || || || Sbjct 155047 TGCCGGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCA-AG-CCGATACCACC 154990 Query 80229 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATC 80288 ||||| || ||||| | || || || | || || ||||| || || ||||| || Sbjct 154989 AGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTC 154930 Query 80289 ATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATT 80345 || |||||| || ||| |||||| ||||| | |||| | || || || || Sbjct 154929 GTCCTTCATGTCAACTAGGAAACAGGAAGACA---GCTGACATTGGGGGGTACCAGCGTT 154873 Query 80346 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT 80405 || | ||||| || ||||| || || || |||| || | ||| ||||| | Sbjct 154872 GAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAAGTCTCCAA 154813 Query 80406 AGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGG 80465 | | ||| || | | ||| || ||||| || ||||| | |||||||||||| Sbjct 154812 AACGCGTTCGATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGAGG 154753 Query 80466 TCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACC 80525 || || ||||||||| || | ||| | | || ||| | |||| ||| || || || Sbjct 154752 TCGCTCGACGATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCC 154693 Query 80526 AAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATA 80585 ||| || | || ||||||| ||||| | || | |||| || | ||||| | Sbjct 154692 AAAGTATTGATAGTTGAAGTCTCTGTCGTAGACGATGGCGGAGTCAAGCTCCTCCTTGTG 154633 Query 80586 TTTGTTAAC-TACATCCATG-GTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTA 80643 ||| | || || ||| || | | || || || || || | |||| || Sbjct 154632 TTTCATGACGCACTCGTATGTCTGTT--TCGAGATCATTGGCGAGGCACGCTCATTCTTG 154575 Query 80644 GGATTAACATAGTTGAATAAATC-CT-CCATCACTTCACTAAATAGtttttttGTTTCCT 80701 || || ||||||| | ||| ||| || || || || | | ||||| || | || Sbjct 154574 GGGTTGACATAGTGGTATAGATCGCTGACAACAGCCGAC--CACTGCTTTTTAGTCTGCT 154517 Query 80702 TGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATG 80753 |||| | || || ||||| || | ||| || | ||| |||||||| ||||| Sbjct 154516 TGTGCAAGTTGGAAACGGCGATACGGGCCGCAAGAATAGCATAATCGGGATG 154465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718246246359680