Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3 91.5 1e-13 >seq3 Length=584709 Score = 91.5 bits (100), Expect = 1e-13 Identities = 195/289 (67%), Gaps = 7/289 (2%) Strand=Plus/Plus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 ||||| |||| || || | ||| |||||||||| || || || || ||||| Sbjct 295395 ATGTAGCTATCGATCAGGAGAGAATATGTTTCAGAGTGAATATTCTCCATCATGATCTGG 295454 Query 13990 AAACCATAAAAACATCTAGCTTCTG--ACCATTGTACCTCCGAGTAAAATCTTTCTGCCA 14047 || ||||| || || | ||| || | ||| || ||||| | || | || || Sbjct 295455 AATCCATAGAAGCAACGAGCCTCCGGAACC--TGAACCTCGCCGCTGAAACGCTCAAGCA 295512 Query 14048 AGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14107 |||||||||| ||||| || ||| ||| ||||| ||||||| |||| | || |||| Sbjct 295513 AGTTTTCATTGACAATGCCGTCAGAAGCAGCAAAGAATGCCAGAATGTGTGATATGAAGT 295572 Query 14108 ATTGCTCTTCATTGTTGA---GTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTT 14164 ||| ||| || | | | | | || ||||||||| || ||||| || ||||| | | Sbjct 295573 ATTTCTCGTCGTCGCTCAGACGATTGTTCCAATCGTGCAAGTCCTTGGACAGATCGATCT 295632 Query 14165 CATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATAT 14213 | || | ||||| ||| || | || || ||||||||| ||| || Sbjct 295633 CTTCGGCCGTCCAGAAAGAGGCTTCGGCCTTCTTATACATTTGCCAAAT 295681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478573772311680