Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq36 154 2e-32 seq3 150 3e-31 seq38 89.7 8e-13 >seq36 Length=226857 Score = 154 bits (170), Expect = 2e-32 Identities = 314/459 (68%), Gaps = 8/459 (2%) Strand=Plus/Plus Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 |||||||| |||||||||||||| || || || || | || ||||| | || |||| Sbjct 155105 GATACGTTGACCAGGGCGGCAATAAGCGACCTGGTGCATTTGCTATCTACCTCGAGCCTT 155164 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||||| ||||| ||||||||| | || |||| || ||| ||| ||||| | Sbjct 155165 GGCACGCAGACGTGTTTGACTTTCTTGATTTGCGAAAGAACCACGGCAAGGAAGAAAACC 155224 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC--AA 97042 | || | ||| | || ||| || ||| | |||||| | ||||||||||||||| || Sbjct 155225 GTGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTTTTCATGAAGCGCGTCGAAA 155284 Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102 || | || | |||| ||| ||||| ||| || || || || ||| | ||||||| Sbjct 155285 GGAACGGGG--ATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGATTGCTA 155342 Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGAC 97161 ||||| ||||||||||| ||| | || |||| |||||||| || |||| Sbjct 155343 TGGCGAGGAGTTTGAGGCTCTCTACGAGAAGTATGAGCGTGAGGGCCGTGGCCGCAAGAC 155402 Query 97162 GAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220 | ||| ||| | |||| || ||| | ||||| | ||| ||| || || || | Sbjct 155403 TATTCG-TGC-CCAGAAGCTCTGGTACTCCATCCTCGAGGCCCAGACCGAAACGGGCAAC 155460 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 || | || || ||||| ||| || || | || |||||||| | |||| ||| Sbjct 155461 CCCTTTATGCTGTACAAAGATGCCTGCAACAGGAAGAGCAACCAGAAAAATCTGGGAACC 155520 Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 || |||| |||||||||||||| || | |||||| Sbjct 155521 ATTCGCAGCTCTAATCTGTGCACGGAGATCATTGAGTAC 155559 >seq3 Length=584709 Score = 150 bits (166), Expect = 3e-31 Identities = 210/289 (73%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| ||||||| || ||||| | ||||| || ||||||| ||||||| |||||||| Sbjct 295681 ATTTGGCAAATGTATAAGAAGGCCGAAGCCTCTTTCTGGACGGCCGAAGAGATCGATCTG 295622 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||| || |||||||| | | |||| ||| || ||| | | || ||||| Sbjct 295621 TCCAAGGACTTGCACGATTGGAACAATCGTCTGAGCGACGACGAGAAATACTTCATATCA 295562 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG-TTGACACG 125197 |||||| |||| |||||||| | || || || || ||||| || || || |||| || Sbjct 295561 CACATTCTGGCATTCTTTGCTGCTTCTGACGGCATTGTCAATGAAAACTTGCTTGA-GCG 295503 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGA 125256 ||| ||| | |||| |||| ||| ||||| || |||||||| ||||||| Sbjct 295502 TTTCAGCGGCGAGGTTCAGGTTCCGGAGG-CTCGTTGCTTCTATGGATTCCAGATCATGA 295444 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 | ||||| | ||||| |||| || ||| ||||| || | ||||| Sbjct 295443 TGGAGAATATTCACTCTGAAACATATTCTCTCCTGATCGATAGCTACAT 295395 Score = 118 bits (130), Expect = 2e-21 Identities = 334/504 (66%), Gaps = 27/504 (5%) Strand=Plus/Minus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCG---TAC 125417 || || ||||| || | |||| ||||| ||||| | | |||||| ||| | | Sbjct 295284 ATCCGGAAAAAAGCAGACTGGGCCATTCGTTGGAT---TCAGGACAAGGATTCCAGCTTC 295228 Query 125418 GCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCG 125477 ||| | | ||||||| ||||| || || |||||||||||||| ||| |||||| Sbjct 295227 GCCCAGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGTGGTGCCTTTGCG 295168 Query 125478 GCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTT 125537 | || || |||||||||||||| || || |||||||| || || | |||||| || Sbjct 295167 TCGATTTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAACGAACTT 295108 Query 125538 ATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTG 125597 || || || || ||||| | ||| ||||||| ||| ||||| | ||| | Sbjct 295107 ATCTCCCGTGATGAGGGTTTGCACACAGACTTTG-CAT--GTCTGTTGC---ACT---CG 295057 Query 125598 CGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGG 125657 | || || | || ||||| | ||| || | || | ||||| || || | Sbjct 295056 CATCTTAAGCACCGAGCCAGCAAGCAAATTATCCAGGATATCATCACCGACGCTGTTGGC 294997 Query 125658 ATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGC-ATGATTGGCATGAACTGCAA 125716 || || ||||||||| | ||||| | || || || || | | ||||||||| || Sbjct 294996 ATTGAGCAAGAGTTTTTGACCGAGGCTCTGCC-GTGTGCTCTCCTAGGCATGAACGCCAC 294938 Query 125717 GCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGG- 125773 |||||| | || || || ||||| || ||||||||| || |||| |||| Sbjct 294937 ACTAATGAAGCAATATATTGAATTTGTCGCCGATCGTCTATTG-----GTTGCACTTGGT 294883 Query 125774 --CCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAG 125831 | ||| | ||||| || || ||||| ||||||||| | ||| || | | Sbjct 294882 AACGAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGT 294823 Query 125832 GGTAAGACCAACTTTTTCGAGAAG 125855 || ||||| ||||| ||||||||| Sbjct 294822 GGCAAGACAAACTTCTTCGAGAAG 294799 >seq38 Length=223153 Score = 89.7 bits (98), Expect = 8e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 126682 TCAATGTAGTCTACGATGCGTTCAATGTCACACTCTTTGACACCACGGGTCGTCACCGCA 126741 |||||||| | ||| ||| |||| ||||| ||| || ||||||| |||||| || Sbjct 186812 TCAATGTACTTGGCGACGCGCTCAAAGTCACTCTCGCCGAAACCACGGCTCGTCATGGCT 186871 Query 126742 GGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTTT 126801 || ||||||| | ||| |||| || | | |||||||||||| ||||| | | ||| Sbjct 186872 GGTGTACCGATACGGATACCGCAGGGGGTCAAAGCGCTCTTGTCACCGGGGATAGAGTTC 186931 Query 126802 TTGTTGCAAGCGAT 126815 ||||||||||| || Sbjct 186932 TTGTTGCAAGCAAT 186945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741035930741120