Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq3 102 7e-17 >seq3 Length=584709 Score = 102 bits (112), Expect = 7e-17 Identities = 174/250 (70%), Gaps = 3/250 (1%) Strand=Plus/Plus Query 13449 TTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATA 13508 |||| || |||||||| |||||| || ||||| ||||| || || | |||||| | | Sbjct 295423 TTTCAGAGTGAATATTCTCCATCATGATCTGGAATCCATAGAAGCAACGAGCCTCCGGAA 295482 Query 13509 CCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAG 13568 ||||||| ||| | || | || |||||||| || || || |||||| ||||| Sbjct 295483 CCTGAACCTCGCCGCTGAAACGCTCAAGCAAGTTTTCATTGACAATGCCGTCAGAAGCAG 295542 Query 13569 CaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACA-AC--TTTAACC 13625 |||| || || || ||||| || || | ||| |||| || || || || || Sbjct 295543 CAAAGAATGCCAGAATGTGTGATATGAAGTATTTCTCGTCGTCGCTCAGACGATTGTTCC 295602 Query 13626 AATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685 |||| | || || || || | ||| | ||| || | ||||| ||||| || | |||| Sbjct 295603 AATCGTGCAAGTCCTTGGACAGATCGATCTCTTCGGCCGTCCAGAAAGAGGCTTCGGCCT 295662 Query 13686 TCTTATACAT 13695 |||||||||| Sbjct 295663 TCTTATACAT 295672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430969205473824