Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15]
2,512 sequences; 38,775,191 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq3 102 7e-17
>seq3
Length=584709
Score = 102 bits (112), Expect = 7e-17
Identities = 174/250 (70%), Gaps = 3/250 (1%)
Strand=Plus/Plus
Query 13449 TTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATA 13508
|||| || |||||||| |||||| || ||||| ||||| || || | |||||| | |
Sbjct 295423 TTTCAGAGTGAATATTCTCCATCATGATCTGGAATCCATAGAAGCAACGAGCCTCCGGAA 295482
Query 13509 CCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAG 13568
||||||| ||| | || | || |||||||| || || || |||||| |||||
Sbjct 295483 CCTGAACCTCGCCGCTGAAACGCTCAAGCAAGTTTTCATTGACAATGCCGTCAGAAGCAG 295542
Query 13569 CaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACA-AC--TTTAACC 13625
|||| || || || ||||| || || | ||| |||| || || || || ||
Sbjct 295543 CAAAGAATGCCAGAATGTGTGATATGAAGTATTTCTCGTCGTCGCTCAGACGATTGTTCC 295602
Query 13626 AATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685
|||| | || || || || | ||| | ||| || | ||||| ||||| || | ||||
Sbjct 295603 AATCGTGCAAGTCCTTGGACAGATCGATCTCTTCGGCCGTCCAGAAAGAGGCTTCGGCCT 295662
Query 13686 TCTTATACAT 13695
||||||||||
Sbjct 295663 TCTTATACAT 295672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430969205473824
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |