Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 >seq6 Length=526567 Score = 104 bits (114), Expect = 2e-17 Identities = 175/251 (70%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 5504 CCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCC 5563 |||||| |||||| || ||||| |||| | | || ||||| | ||||| || Sbjct 237842 CCCGTGCTCCCGAACCCACCTGCTCCTCGCACACTCTCCTCCAGCTCCTGTACCTCCACC 237901 Query 5564 ACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTAC 5622 || ||||| | || |||||| ||||| ||||| | || ||||||| ||| | Sbjct 237902 ACCTCGGGCGT-GTAGATGCGCTCAATGATCAATTGCGCCACTCTGTCGCCCTCCTTGAT 237960 Query 5623 CTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGC 5682 ||| || ||| | | | | |||||| |||| || || | ||||||||| ||||| Sbjct 237961 CTCAAAGTCGGTCTCGGCATGGTTGAAAAGCAGGACCTTGACTTGGCCGCGGTAATCGGC 238020 Query 5683 GTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGC 5742 ||| || || |||||||| |||||||| || ||| || || || ||||||||||| Sbjct 238021 GTCAATGACTCCCGCGCCAGTATCGATGAAATGTTTGCTTGCGAGACCAGAGCGGGGAGC 238080 Query 5743 CACGCGGCCGT 5753 | |||||||| Sbjct 238081 AATGCGGCCGT 238091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430041233884544