Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq9 111 1e-19 seq5 91.5 1e-13 >seq9 Length=455495 Score = 111 bits (122), Expect = 1e-19 Identities = 157/217 (72%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 |||||||| |||||| |||||||||||||||| | | || || ||||||| ||||| Sbjct 294223 TGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTG-CGGCCGTCCTCGAGCTG 294165 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | |||| ||||||||| || || | | |||||||||| ||| || Sbjct 294164 CTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGAATCTT 294105 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||||| | | || ||||| | ||||| ||||| || ||||| || ||||| Sbjct 294104 CGACTTGACATTGTCAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGT 294045 Query 48703 GAGAGTTTTCACAAAAATCTGCATCGTGTCTT-GATC 48738 ||| || || || || || ||||| || ||| |||| Sbjct 294044 GAGGGTCTTGACGAAGATTTGCATGGTTGCTTCGATC 294008 >seq5 Length=531522 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| || || || ||||||||||| || |||||||| || || | || || | |||| Sbjct 177133 CACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTC-GCTCAGGGTGCGGCCATCCT 177191 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | ||||||||||| | | || | || ||||| ||| || | | ||||||||| Sbjct 177192 CGAGCTGCTTACCAGCAAAGATGAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCT 177251 Query 48636 TAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 || || ||||| | | || ||||| |||| ||||||| ||| | || || || Sbjct 177252 GGATCTTGGACTTGACGTTGTCG--ATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGT 177309 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733 || || ||||| ||||| || |||||||||||| || || Sbjct 177310 CTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTTGCCT 177349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421238303394512