Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq38 176 7e-40 seq69 174 2e-39 >seq38 Length=223153 Score = 176 bits (194), Expect = 7e-40 Identities = 200/263 (76%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| |||| ||| |||||| || |||||||| || ||||||||||| |||| Sbjct 56538 CGCTAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCTA 56480 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || || || ||||| |||||||| ||||||||| |||||| || | || ||||||| Sbjct 56479 TTCGCCGCCTCGCTCGCCGTGGTGGTGTCAAGCGTATCTCTGCCATGATTTACGAAGAGA 56420 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACC 16609 ||| ||| ||||||| |||||| | || |||| ||||||| || || || || Sbjct 56419 CTCGCACTGTCTTGAAGACTTTCCTCGAAGGTGTCATCCGTGATGCTGTTACA-TACACA 56361 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 || ||||| ||||| ||||| ||||| || | || |||| || || | || || ||| Sbjct 56360 GAACACGCAAAACGAAAGACCGTCACGTCTCTCGACGTCGTGTACGCGCTAAAGCGACAA 56301 Query 16670 GGCCGTAAGATTTATGGTTTTGG 16692 ||||||| | ||||| || || Sbjct 56300 GGCCGTACCTTATATGGGTTCGG 56278 >seq69 Length=170138 Score = 174 bits (192), Expect = 2e-39 Identities = 186/243 (77%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || |||||||| || || |||||||| ||||| Sbjct 66605 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATTACCAAGCCCGCTAT 66547 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| |||||||||||||| ||||||||| | || | || |||| ||||||| Sbjct 66546 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCCGCCATGATCTACGAAGAGAC 66487 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || ||| | |||| ||||||| || || |||| |||||| || ||| || || Sbjct 66486 CCGCACTGTCCTCAAGACCTTCCTCGAGGGTGTCATCCGTGATGCCGTCACCTACACTGA 66427 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||||| | || ||||||| || |||| || || || Sbjct 66426 GCACGCCAAGCGCAAGACCGTCACCTCTCTCGACGTCGTCTACGCTCTGAAGCGACAGGG 66367 Query 16672 CCG 16674 ||| Sbjct 66366 CCG 66364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072903260816