Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq36 365 1e-95 seq3 89.7 1e-12 >seq36 Length=226857 Score = 365 bits (404), Expect = 1e-95 Identities = 1076/1634 (66%), Gaps = 42/1634 (3%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| | || ||| | | ||| ||||| || | | ||| ||||||| Sbjct 154846 TTCACCCACGCCTCACCTACACTCTTCAACGCTGGTACCCCCCAATGTCAGCTGTCTTCC 154905 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || || | | ||||||||||| ||| || ||||||| ||||| || |||| Sbjct 154906 TGTTTCCTAGTTGACATGAAGGACGACAGCATTGACGGTATCTACGACACTCTCAAGACC 154965 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 ||||| | || ||||||| || || || || || | | || ||||| | ||||| Sbjct 154966 TGTGCCATGATCTCCAAGATGGCTGGTGGTATCGGCTTGAACG-TCCACCGCATCCGTGC 155024 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTT 363783 || | | ||||||| |||||| || ||| || || || | ||||||||||| Sbjct 155025 CACCGG-CTCTTACATTGCCGGCACCAACGG-TACATCCAACGGCATCATTCCCATGCTT 155082 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 || || || |||| ||||| || ||||| |||||||| || ||||| || || Sbjct 155083 CGCGTCTTCAACAACACTGCCAGATACGTTGACCAGGGCGGCAATAAGCGACCTGGTGCA 155142 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 |||||||| || ||||||||| || || || | ||||| |||||||| | || || Sbjct 155143 TTTGCTATCTACCTCGAGCCTTGGCACGCAGACGTGTTTGACTTTCTTGATTTGCGAAAG 155202 Query 363904 AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 ||| || || || ||| ||||| || || || ||| ||| || ||| | | || Sbjct 155203 AACCACGGCAAGGAAGAAAACCGTGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGAT 155262 Query 363964 CATTTTATGAAGCGCGTGG--AGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAAT 364021 | ||| ||||||||||| | ||| | | | ||||| | ||| | || || |||| | Sbjct 155263 CTTTTCATGAAGCGCGTCGAAAGGAACG--GGGATTGGACCCTCATGTGTCCCAACGAGT 155320 Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAAT 364081 | || || || | ||| | || || || | || ||||| ||||| |||||||| Sbjct 155321 GCCCTGGCCTGGCTGATTGCTATGGCGAGGAGTTTGAGGCTCTCTACGAGAAGTATGAGC 155380 Query 364082 CGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141 ||||| | || ||||| |||| || |||||||| |||| ||||| | || Sbjct 155381 GTGAGGGCCGTGGCCGCAAGACTATTCGTGCCCAGAAGCTCTGGTACTCCATCCTCGAGG 155440 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 | |||| || || || | |||| |||| ||||||||||| | |||||| | ||| || Sbjct 155441 CCCAGACCGAAACGGGCAACCCCTTTATGCTGTACAAAGATGCCTGCAACAGGAAGAGCA 155500 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATAC 364260 ||||| | | || || || |||| |||| | || || || || ||||| ||||| ||| Sbjct 155501 ACCAGAAAAATCTGGGAACCATTC-GCAGCTCTAATCTGTGCACGGAGATCATTGAGTAC 155559 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT- 364319 || || || ||| ||| || || ||| | || || | || || || || || || Sbjct 155560 TGTGCCCCTGATGAGGTTGCTGTTTGCAACTTGGCCTCTCTTGCCCTGCCTGCCTTCGTC 155619 Query 364320 -----AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCA--TGCTA 364372 ||||| || | ||| |||| | || | || || || ||| || | Sbjct 155620 GACTACAAAGAAGGCCGCTACGACTTCCAGAAGCTCCACGAGGTGAC---TCAAGTGGTC 155676 Query 364373 CT-TGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG---- 364426 | | || ||| ||||| | ||||| || |||| || ||| || || || Sbjct 155677 GTCCGTAACCTCAACAAGATCATCGATGTCAACCATTACCCCATTGAGGAGGCTCGCAAC 155736 Query 364427 AGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTT 364486 ||| || ||||| ||||| || || ||| ||||||| ||||| || || |||| || Sbjct 155737 AGC-----AACATGCGACATCGACCCATCGGTGTTGGTGTTCAGGGTCTTGCCGACGCTT 155791 Query 364487 TTATGATGCTC--AAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGAT 364544 || | ||||| ||| | || || || || || || |||| || || ||| | || Sbjct 155792 TTCT--TGCTCTGCGCATGCCCTTCGAGTCTCCCGAGGCCCGTGAGCTCAACAAGCAAAT 155849 Query 364545 CTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGG-CAAAAACCAAGG 364603 || || || || || || || |||| || || ||| ||| |||| | ||| | Sbjct 155850 TTTCGAGACCATTTACCACGCTGCCCTGACAGCCTCTCTTGAGCTGGCCAAAGAGCAA-G 155908 Query 364604 GAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTAT 364663 | |||||||| | |||| || || ||| | || | ||||| || | | Sbjct 155909 GCCCCTACTCTACCTTCAAGGGCTCTCCCGCCTCGGAAGGTGTTCTTCAGTTCGACATGT 155968 Query 364664 GGAATGTCACGCCATCTGTCCGATGGAACTGGGA-TACGCTACGTTCCAACGTTAAGAAG 364722 ||||||||| ||| |||| ||| | ||||| || | | | | | ||| || Sbjct 155969 GGAATGTCAAGCCTTCTGAGTTGTGGGAGTGGGACAACTTGAAGGAGC-AGATCAAGCAG 156027 Query 364723 CATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATC 364782 || |||| ||||||||| | | || ||||||||||| || ||||| | || ||| Sbjct 156028 CACGGTATTCGCAACTCGTTGCTGCTCGCTCCCATGCCCACCGCCTCTACCTCGCAAATC 156087 Query 364783 CTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTT 364842 || || ||||| |||||||| || || | || ||| |||| ||||| || | Sbjct 156088 CTGGGTAACAATGAGTGCTTTGAGCCATACACGTCCAACATTTACCAGCGCCGTGTCTTG 156147 Query 364843 TCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTG 364902 | || ||||| | ||| || || | || |||||||||| ||| || || Sbjct 156148 GCTGGTGAATTCCAGGTCGTCAACCCCTGGCTCCTCAAGGATCTCGTCGATATGGGTCTT 156207 Query 364903 TGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCA 364962 ||| ||| |||||||||| ||||| |||| || ||||| | ||||||||||| Sbjct 156208 TGGTCTGATGCCATGAAGAACCGCATCATTGCCGAGAACGGTTCCATTCAGAACATTCCC 156267 Query 364963 GGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACT 365022 | || | || | ||| || | ||||| || || ||||| ||||| ||| | Sbjct 156268 AATATCCCCGCCGACATCAAGGCTCTCTACAAGACTGTTTGGGAGATTTCTCAGCGTCAT 156327 Query 365023 CTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTA 365082 | || | ||||| ||||||||||||||||||||| ||| ||||||| | ||||| Sbjct 156328 GTTATCCAGATGGCCGCCGATCGCGGTGCTTTTATCGACCAGTCCCAGTCGCTCAACGTT 156387 Query 365083 TTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCC 365142 ||||| | || || | |||| | || || ||||| || || ||||| | Sbjct 156388 CACATGAAGGATCCTACTATGGGCAAGATCACCTCTATGCACTTTGCTGGCTGGAAGTTG 156447 Query 365143 GGTCTTAAGACAGG 365156 ||||| ||||| || Sbjct 156448 GGTCTCAAGACGGG 156461 >seq3 Length=584709 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 22758 TCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCT 22817 |||| | || || || ||| | ||||| ||||||| ||||||| || |||||||| Sbjct 294958 TCTCCTAGGCATGAACGCCACACTAATGAAGCAATATATTGAATTTGTCGCCGATCGTCT 294899 Query 22818 ATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGA 22877 ||| || |||| ||| | | |||| || || || || || || || | ||||| Sbjct 294898 ATTGGTTGCACTTGGTAACGAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGA 294839 Query 22878 ACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAA 22937 ||||| | | || ||||| || |||||||| || ||||||| ||||| ||||| Sbjct 294838 GAACATTTCCTTGGGTGGCAAGACAAACTTCTTCGAGAAGCGAGTTGGAGAATATCAAAA 294779 Query 22938 AGCAGGTGTTATGG 22951 || || ||||||| Sbjct 294778 GGCTGGCGTTATGG 294765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303311651564384