Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq36 289 3e-73 seq9 141 9e-29 seq5 122 8e-23 >seq36 Length=226857 Score = 289 bits (320), Expect = 3e-73 Identities = 821/1253 (66%), Gaps = 25/1253 (2%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||||||| || || || ||||| ||||| ||| || | ||| |||||| | || Sbjct 156170 TTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGC 156111 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 ||||| |||| || || ||||||||||| | ||| | |||||||||||| || | | Sbjct 156110 TCAAAGCACTCATTGTTACCCAGGATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGAGC 156051 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | || || ||||| | ||||||| |||||| | ||||| | | |||| ||||| Sbjct 156050 AGCAACGAGTTGCGAATACCGTGCTGCTTGATCTGCTCCTTCAAGTTGTCCCACTCCCAC 155991 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 | | || ||| | || | |||||||||| |||| | || || || |||||| | Sbjct 155990 AACTCAGAAGGCTTGACATTCCACATGTCGAACTGAAGAACACCTTCCGAGGCGGGAGAG 155931 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAGCG 145357 || | |||| | ||| ||| |||||| ||||| | || ||| || Sbjct 155930 CCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTCAGGGCA 155871 Query 145358 CCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTAC 145417 || ||||| |||||| ||||||| |||||||| || || |||| | Sbjct 155870 GCGTGGTAAATGGTCTCGAAAATTTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAG 155811 Query 145418 GGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGA 145477 ||||||||||| | |||||| ||||| || ||||| | || || |||||||| ||| Sbjct 155810 GGCATGCGCAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGA 155751 Query 145478 TGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTTTA 145537 ||| ||||||||| | | ||| ||| || || || | || ||||| || || Sbjct 155750 TGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCGATGATCTTG 155691 Query 145538 TTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCC 145597 || | ||| || || || || | || | | | | ||| | ||||| | || | Sbjct 155690 TTGAGGTTACGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCT 155631 Query 145598 TCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCC 145657 || | | | || || | | ||| | || ||||| || ||||| || ||| Sbjct 155630 TCTTTGTAGTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCA 155571 Query 145658 TCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATT---GCTACATTTGATGGTTCCC 145714 || | | | | ||| | | |||||| | ||||| ||| ||| | ||||||||| Sbjct 155570 TCAGGGGCACAGTACTCAATGATCTCCGTGCACAGATTAGAGCTGC---GAATGGTTCCC 155514 Query 145715 AGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCA 145774 ||||||| ||| || || ||||||||||| || || ||||| ||||| | || ||| Sbjct 155513 AGATTTTTCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTACAGCATAAAGGGGTTGCCC 155454 Query 145775 GTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAG---TCCTGCGCACGCACCTGCTGC 145831 || || ||| | ||| | ||| | || | || | ||| ||||| | || Sbjct 155453 GTTTCGGTCTGGGCCTCGAGGATGGA---GTACCAGAGCTTCTGGGCACGAATAGTCTTG 155397 Query 145832 TGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAA 145891 || |||||||| || || ||| |||||| |||||||| | || |||||| Sbjct 155396 CGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAA 155337 Query 145892 TCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACG 145951 || | |||||| || |||| |||||||||||| || | ||| | ||||| | |||| Sbjct 155336 TCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCCTTTCGACG 155277 Query 145952 CGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCG----CGCTTTGCA 146007 |||| ||| || | |||||| | |||||| || | | |||||| || ||| | Sbjct 155276 CGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTC- 155218 Query 146008 ATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCCACGG 146067 |||| | | ||||| ||||| ||| | | | | ||| |||||||| || Sbjct 155217 TTCCTTGCCGTGGTTCTTTCG---CAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGG 155161 Query 146068 TTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACGTGACGTAC 146124 || | |||| || | || || ||| ||||| |||||||| |||| | | Sbjct 155160 CTCGAGGTAGATAGCAAATGCACCAGGTCGCTTATTGCCGCCCTGGTCAACGTATCTGGC 155101 Query 146125 CATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGAGTT 146184 ||||||| |||||||| | |||||| || |||| ||| | ||||| || | Sbjct 155100 AGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGC 155041 Query 146185 TATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC-GCCGTACT 146243 || | |||| || || | || || || |||| ||||| ||| || ||| | || Sbjct 155040 AATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCAT-CT 154982 Query 146244 TGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG 146296 |||| || ||| ||| ||| || |||||||| ||||||||||| ||| Sbjct 154981 TGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCG 154929 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| ||||||||||| ||| || ||| || |||||| ||||||||||| ||| ||| Sbjct 82975 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGA 82916 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || |||||||| || || || || || || ||||| |||||| ||||| | | Sbjct 82915 TCAATCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGT 82856 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || || | |||||||| || | ||| | ||| || || || ||||| || |||| Sbjct 82855 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGA 82796 Query 131225 AA 131226 || Sbjct 82795 AA 82794 >seq9 Length=455495 Score = 141 bits (156), Expect = 9e-29 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| |||||||||||||| | ||||| |||||| |||||||| || Sbjct 294217 GTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCA 294158 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||||| |||||||||||| || ||||||||||| ||||| || ||| |||| Sbjct 294157 GCGAAGATTAGACGCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGAATCTTCGACTTG 294098 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | |||||| | ||||||| |||| |||| ||| || ||||| || || Sbjct 294097 ACATTGTCAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTC 294038 Query 131218 TTTACGAAAATCTGCATG 131235 || ||||| || |||||| Sbjct 294037 TTGACGAAGATTTGCATG 294020 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||| |||||||| | || |||||||| ||||| ||||| ||| | Sbjct 294776 CCACCCCGCAGACGCAGGACTAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGAC 294717 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || || |||| | ||||||||||| || || Sbjct 294716 AAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 294657 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || || || ||| | | || | ||||| | ||| || | Sbjct 294656 ATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAGGATTCAACT 294597 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || || || | ||| || ||||| |||||||| Sbjct 294596 TCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 294550 >seq5 Length=531522 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||||| || || | ||| |||||| || |||||||| |||||| Sbjct 177116 CCACCACGAAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 177175 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || || |||| | || ||||||||||| || Sbjct 177176 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGTTGCTGGTCCGGGGGA 177235 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 177236 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 177295 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || ||||| |||||||||||||| Sbjct 177296 TCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 177342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471997978798080