Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq36 129 7e-25 >seq36 Length=226857 Score = 129 bits (142), Expect = 7e-25 Identities = 749/1186 (63%), Gaps = 35/1186 (3%) Strand=Plus/Minus Query 62556 AGAG-AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 62614 |||| || ||| ||||| || | || |||||||||| |||||| |||| ||||| | | Sbjct 155801 AGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATG 155742 Query 62615 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62674 || | | ||| || ||| || |||| || | ||| || || || ||||| || Sbjct 155741 TTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCGATGATCTTGTTGAGGTTA 155682 Query 62675 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT--- 62731 | ||| | |||| ||| || | || || | || || | || || ||| | Sbjct 155681 CGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCTTCTTTGTAG 155622 Query 62732 ---ACAAA--CATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 62786 || || || | || |||| ||| |||| || ||||| || ||||||| || Sbjct 155621 TCGACGAAGGCAGG--CAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGG 155564 Query 62787 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 62846 | || | || ||||| ||||| |||||| | |||||||| | ||||| | Sbjct 155563 CACAGTACTCAATGATCTCCGTGCACAGATTAGAGCTGCGAATGGTTCCCAGATTTTTCT 155504 Query 62847 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 62906 | || ||||| |||| || ||||| || || || || || || | || ||||| ||| Sbjct 155503 GGTTGCTCTTCCTGTTGCAGGCATCTTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCT 155444 Query 62907 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCT-CTTT 62965 | | || | || | | ||||| | || | | | |||| ||| | | Sbjct 155443 GGGCCTCGAGGATGGAGTACCAGA-GCTTCTGGGCACGA--ATAGTCTTGCGGCCACGGC 155387 Query 62966 TCTCTTTCGTATAGT----GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAG 63021 ||| | ||| | ||| | | | || ||||| || || | || |||| Sbjct 155386 CCTCACGCTCATACTTCTCGTAGAGAGCC--TCAAACTCCTCGCCATAGCAATCAGCCAG 155329 Query 63022 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC--ACTCGTTTC 63079 ||||| || || | |||||||| | | ||| || |||| ||||| || || ||| Sbjct 155328 GCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGT--TCCTTTCGACGCGCTTC 155271 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || || ||||| || ||||| ||||| | || || || | | | | ||| || || Sbjct 155270 ATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTG 155211 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || |||||| | ||| || || | | | || | ||||| || || | ||| Sbjct 155210 CCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAG 155151 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 || || | | ||||| || || || || ||||| || | |||||| || ||||| || Sbjct 155150 ATAGCAAATGCACCAGGTCGCTTATTGCCGCCCTGGTCAACGTATCTGGCAGTGTTGTTG 155091 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 | || | | ||| ||||| || || ||||||||||| ||||| || | || || Sbjct 155090 AAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAG 155031 Query 63320 CCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63377 || ||||||| || | || | || || || || || ||||| || ||||| | Sbjct 155030 CCGGTGGCACGGATGCGGTGGACGTTCA-AG-CCGATACCACCAGCCATCTTGGAGATCA 154973 Query 63378 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 63437 || || || | || || ||||| || || || || || ||| |||||| || || Sbjct 154972 TGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCAACTA 154913 Query 63438 GAAAACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 63494 | |||||| ||||| | |||| | || || || || || | ||||| || | Sbjct 154912 GGAAACAGGAAGACA---GCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGG 154856 Query 63495 CGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCC 63554 |||| || || || || | || | ||| ||||| | | | || || | Sbjct 154855 CGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAAGTCTCCAAAACGCGTTCGATGTTGT 154796 Query 63555 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 63614 | ||| || || || || ||||| | |||||||||||||| || ||||||||| Sbjct 154795 CTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGAGGTCGCTCGACGATCTTGC 154736 Query 63615 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 63674 ||| | ||| | | || ||| | |||| ||| || || ||||| || | || | Sbjct 154735 CGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATAGTTGA 154676 Query 63675 AGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 63720 |||||| ||||| | || | |||| || | ||||| | ||| Sbjct 154675 AGTCTCTGTCGTAGACGATGGCGGAGTCAAGCTCCTCCTTGTGTTT 154630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633612103955200