Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq9 107 2e-18 >seq9 Length=455495 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || | || ||| | ||||| || || || Sbjct 294550 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTTGAATCCTCG 294609 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | ||| | || | ||| || || ||||| ||||| |||||||| Sbjct 294610 GATACGATCGATAATGTAAAGTCTAAGATTCAA-GATAAGGAAGGCATTCCCCCTGACCA 294668 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| || || || | || |||| || ||| || ||| ||||| Sbjct 294669 GCAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAA 294728 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || || || || || |||||||| || Sbjct 294729 TATTCAGAAGGAGTCTACTCTGCATTTAGTCCT 294761 Score = 100 bits (110), Expect = 2e-16 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || || | || || | ||||| || || ||| Sbjct 294778 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTCGAATCTTCT 294837 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || ||||| || || || | || | ||| || || || || || || |||||| Sbjct 294838 GATACCATCGA--CAATGTCAAATCTAAGATTCAG-GATAAGGAGGGTATCCCTCCTGAC 294894 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || ||||||||||||| || || | ||||| | ||||| || |||| ||| Sbjct 294895 CAGCAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTAC 294954 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||| ||| | ||| | ||||| Sbjct 294955 AACATCCAGAAGGAAAGCACTTTGCATCTCGTGCT 294989 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/206 (72%), Gaps = 7/206 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||| || |||| |||||||||||||| || ||||||| | || || ||||| || Sbjct 294323 ATGCAA-TAGTTGTCAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTCGAGTCCTCC 294381 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || ||| | || | ||| || || || || || || ||||| Sbjct 294382 GACACCATCGA--CAATGTCAAGTCGAAGATTCA-GGATAAGGAGGGTATCCCTCCTGAT 294438 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | ||||| || || || || | ||||||| || || | ||| ||| Sbjct 294439 CAGCAGCGATTGATTTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACCCTCTCCGACTAC 294498 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 ||||| || || |||||||| || || Sbjct 294499 AATATCCAGAAGGAATCCACCCTTCA 294524 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||| |||||||| || || ||||| | ||||| || |||| || |||| || ||||| Sbjct 294017 AACCATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTC 294076 Query 25055 GTCTGACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 |||||| ||||| || || || ||| | || | ||| ||||| ||||| || || || Sbjct 294077 GTCTGATACTATTGA--CAATGTCAAGTCGAAGATTCA-GGACAAGGAAGGAATCCCCCC 294133 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 |||||| ||||| | || || || || || || | || || | |||||| | || Sbjct 294134 TGACCAGCAGCGTCTAATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCTGA 294193 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACA 25201 |||||| ||||| || || || || || || Sbjct 294194 TTACAACATTCAGAAGGAGTCAACACTTCA 294223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433314733663280