Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3 114 1e-20 >seq3 Length=584709 Score = 114 bits (126), Expect = 1e-20 Identities = 198/287 (69%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| ||||||| | |||||||| ||||||| || | ||||||||| || ||| Sbjct 295395 ATGTAGCTATCGATCAGGAGAGAATATGTTTCAGAGTGAATATTCTCCATCATGATCTGG 295454 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 ||||| ||||| || | ||| |||| | ||| || || || | ||| | | Sbjct 295455 AATCCATAGAAGCAACGAGCCTCCGGAACCTGAACCTCGCCGCTGAAACGCTCAAGCAAG 295514 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 ||||||||||| || || || || || ||||| || |||| || || ||| || | | Sbjct 295515 TTTTCATTGACAATGCCGTCAGAAGCAGCAAAGAATGCCAGAATGTGTGATATGAAGTAT 295574 Query 93542 TTCTCATCATCTTT---AAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598 ||||| || || | | | || | ||||||| | || || || ||||||| ||| Sbjct 295575 TTCTCGTCGTCGCTCAGACGATTGTTCCAATCGTGCAAGTCCTTGGACAGATCGATCTCT 295634 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 ||| | ||||| || || ||||| || || || ||||| | ||| || Sbjct 295635 TCGGCCGTCCAGAAAGAGGCTTCGGCCTTCTTATACATTTGCCAAAT 295681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556843314570880