Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq5 120 3e-22 seq9 114 1e-20 seq36 109 5e-19 >seq5 Length=531522 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || ||||| | || || || ||| |||| ||||| ||||| | Sbjct 177345 AAGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 177286 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | ||| | |||| || || || ||||||||||| ||||| || || Sbjct 177285 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 177226 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||||| || || ||||| || || ||| | |||||| ||||||| | ||| ||| Sbjct 177225 CAGCAACGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 177166 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || |||| | || || || |||| | || || ||| Sbjct 177165 AACATCCAGAAGGAGAGCACCCTGCACTTGGTGCTGCGCCTTCGTGGTGGT 177115 >seq9 Length=455495 Score = 114 bits (126), Expect = 1e-20 Identities = 145/198 (73%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||| | |||| || ||||| ||||| || || |||| ||||| || || || || Sbjct 294323 ATGCAA-TAGTTGTCAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTCGAGTCCTCC 294381 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || ||||| || ||||||||||| || || ||||| Sbjct 294382 GACACCATCGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCTCCTGATCAG 294441 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || || || ||| | || ||| ||| ||| ||||||| ||||| Sbjct 294442 CAGCGATTGATTTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACCCTCTCCGACTACAAT 294501 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || ||||||||| Sbjct 294502 ATCCAGAAGGAATCCACC 294519 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || || || || || || | || | ||||| ||| | | Sbjct 294778 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTCGAATCTTCT 294837 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || ||||| || ||||| || ||||||||||| || || || || Sbjct 294838 GATACCATCGACAATGTCAAATCTAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCAG 294897 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| ||||| |||||||| || ||| | || || |||||| | ||| |||||| Sbjct 294898 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTACAAC 294957 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||| ||| | ||| | || | || |||| || ||| Sbjct 294958 ATCCAGAAGGAAAGCACTTTGCATCTCGTGCTTCGTCTGCGAGGTGGT 295005 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || | ||||| || || || | | Sbjct 294021 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTCGTCT 294080 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || |||| || ||||| |||||||| || || || || || || Sbjct 294081 GATACTATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAAGGAATCCCCCCTGACCAG 294140 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | ||||| |||||| | || ||||||||| Sbjct 294141 CAGCGTCTAATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCTGATTACAAC 294200 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 294201 ATTCAGAAGGAGTCAAC 294217 >seq36 Length=226857 Score = 109 bits (120), Expect = 5e-19 Identities = 461/721 (64%), Gaps = 8/721 (1%) Strand=Plus/Minus Query 129133 ACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAAC 129192 || || || ||||| ||||| || || || |||||||||| ||| | |||||||| Sbjct 156164 ACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAG 156105 Query 129193 GATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCA-AAG 129251 | |||||||| || | ||||| | || | |||||||||||| ||| | ||| | Sbjct 156104 CACTCATTGTTACCCAGGATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGA-GCAGCAA 156046 Query 129252 CGAGTTTCGCAAACCGTGCTGTTTAATGT-CtttttttAATTGTGTCCAGTCCCACATCG 129310 |||||| || | ||||||||| || || | || || | |||| ||| ||||||| | Sbjct 156045 CGAGTTGCGAATACCGTGCTGCTTGATCTGCTCCTTCAAGTTGT-CCCACTCCCACAACT 155987 Query 129311 ATGTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAA 129370 | || || |||||||| |||| | || | | ||| ||||||| | Sbjct 155986 CAGAAGGCTTGACATTCCACATGTCGAACTGAAGAACACCTTCCGAGGCGGGAGAGCCCT 155927 Query 129371 AGTAGGAATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAA 129430 | ||| | || ||| | |||| |||| || | ||| || || | Sbjct 155926 TGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTCAGGGCAGCGT 155867 Query 129431 AATAAATTGTTTCGGCAATTTTGGTGTTCAACACTTTGGCCTGGTCGCTTTCGTACGGCA 129490 ||||| || ||| ||||| |||| | | | ||||| | ||| | |||| Sbjct 155866 GGTAAATGGTCTCGAAAATTTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCA 155807 Query 129491 TACGC--AACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATG 129548 | ||| | || | ||| | |||||| | ||| |||| ||| ||||||||||||||||| Sbjct 155806 TGCGCAGAGCAAG--AAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATG 155749 Query 129549 TTTTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTT 129608 | | ||| || | ||| | | ||| || | ||||| || || || ||||| Sbjct 155748 TCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCGATGATCTTGTT 155689 Query 129609 TAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTAC 129668 | || ||| || | || || || | | | | | | || | ||| |||| | Sbjct 155688 GAGGTTACGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCTTC 155629 Query 129669 ATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTT 129728 | | |||||| || | | || |||||||| ||||| || ||| || | Sbjct 155628 TTTGTAGTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATC 155569 Query 129729 TTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATG 129788 | ||| |||||| | || || | ||||| |||| | |||||| |||| || Sbjct 155568 AGGGGCACAGTACTCAATGATCTCCGTGCACAGATTAGAGCTGCGAATGGTTCCCAGATT 155509 Query 129789 CTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 || || || || ||| ||||||| ||||||||||||| ||| | || |||||||||| Sbjct 155508 TTTCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTACAGCATAAAGGGGTTGCCCGTTTC 155449 Query 129849 G 129849 | Sbjct 155448 G 155448 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || ||| | || || || || |||| ||||| || || || | || || | Sbjct 82794 TTTCGTCAAGACTCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACGAT 82853 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| || |||| ||||| |||||||||||||| ||||| || ||||| || || | Sbjct 82854 CGACAATGTCAAGTCCAAAATCCAAGACAAGGAGGGCATTCCCCCTGATCAGCAGCGATT 82913 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || || ||||| ||| | ||||| || ||| | ||||| ||||||||||| || Sbjct 82914 GATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTCCGACTACAACATTCAGAA 82973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419715150027280