Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq31 132 1e-25 >seq31 Length=254643 Score = 132 bits (146), Expect = 1e-25 Identities = 435/671 (65%), Gaps = 9/671 (1%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || ||||| |||||||||||||||||||| ||| | |||| ||||| || Sbjct 42737 GTCGGCTCGCTGTCTGGTGGTTGGAAGATGAAGCTCGCCTTGGCTCGTGCCATGCTCAGA 42796 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||| || || || || || || || ||||| || | ||| | ||||| | ||| Sbjct 42797 AAAGCCGACGTGCTTCTCCTCGACGAACCTACCAATCATCTCGACGTCGCCAACATCGCC 42856 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | |||||| | | || || | | |||||||| ||||||||| Sbjct 42857 TGGCTGGAGAACTACCTCAAGACTCATCCAAACATCACCAGTCTCATTGTTTCTCACGAC 42916 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTC 279935 || || ||||| || || | | | |||| ||||| |||| || |||||| Sbjct 42917 TCCGGGTTCCTGGACAATGTCACCACGGACATCTACCACTACGAGCCCAACAAGAAGCTG 42976 Query 279936 TCCAAGC-ACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTA 279994 | | || ||| ||||||||| |||| || || | ||||| || ||| |||| Sbjct 42977 GC-ATGCTACAAGGGCAACCTGGCTGCCTTTGTCGAGGTCCGCCCCGAAGCGAAGTCCTA 43035 Query 279995 CTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGG 280054 ||| |||| | | ||| || | ||| | || ||| || || |||| || Sbjct 43036 CTACACCCTGTCTGCCTCCAACGTCCAGTTCAAGTTTCCTCCTCCGGGAATTCTCACAGG 43095 Query 280055 CATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAA 280114 | ||| ||| || || || ||||| | | ||| || | | || ||||| Sbjct 43096 CGTCAAGTCACAGACGCGAGCCATCATTCGCATGAGCAACGTGTCGTACACGTACCCCAA 43155 Query 280115 TGGCCCCAACATCTTCAGCAGT-----GTCAACTCGCAGGTTTCTATGAACTCACGGATT 280169 |||||||| | || || || ||| || ||| | ||| || || || | Sbjct 43156 -GGCCCCAAAGCCCTC-GCTGTCCGAAGTCTCCTGTCAGCTGTCTCTGTCTTCCCGTGTG 43213 Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 | |||| || ||||| |||||||| ||||| ||||| ||||| | || || || || Sbjct 43214 GCCATCATCGGGCCCAACGGTGCGGGCAAGTCCACCCTCATCAAGCTGCTCACCGGTGAA 43273 Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 | | |||| || || ||||||||||||| |||| || | |||| || Sbjct 43274 AGCATCCCCACCACAGGCAAAGTCGAGAAGCATCCCAACCTGCGCATCGGTTACATCAAG 43333 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 |||||||| | | ||| | |||| ||||| || | ||| || ||||| ||| | ||| Sbjct 43334 CAGCACGCCCTGGAGCACGTGGAGATGCACCTTGAGAAGACCCCGAACCAGTACCTCCAG 43393 Query 280350 TGGCGCTATGC 280360 ||||| ||||| Sbjct 43394 TGGCGATATGC 43404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027803719072592