Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq5 179 7e-40 seq9 143 5e-29 seq36 116 7e-21 seq31 105 1e-17 >seq5 Length=531522 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||||| |||||||| || ||| ||| || |||||||| || ||| Sbjct 177116 CCACCACGAAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 177175 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || ||||||| ||| ||||| || ||| Sbjct 177176 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGTTGCTGGTCCGGGGGA 177235 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 177236 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 177295 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || ||||||||||| |||||||| |||||||| Sbjct 177296 TCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 177342 >seq9 Length=455495 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| || || || || || ||||| || || || || || ||||| Sbjct 294776 CCACCCCGCAGACGCAGGACTAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGAC 294717 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | |||||| || || || ||||||| || ||||| || ||| Sbjct 294716 AAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 294657 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| ||||||||||| | ||| || ||||| || || | ||||| ||| Sbjct 294656 ATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAGGATTCAACT 294597 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || || || || | ||||||||||| |||||||| Sbjct 294596 TCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 294550 Score = 136 bits (150), Expect = 7e-27 Identities = 167/227 (74%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || ||||| || || ||||| || || |||||| Sbjct 294548 CCACCACGGAGGCGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCGGAG 294489 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| || | || || || || || || Sbjct 294488 AGGGTACGGCCATCTTCCAGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGGAGGG 294429 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||| | |||||| ||||||||||| | || || || Sbjct 294428 ATACCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACC 294369 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| ||||| || | |||||||| | ||| ||||| Sbjct 294368 TCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACAACTAT-TGCAT 294323 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || || ||||| || || ||||| ||||| || Sbjct 294247 CCACCTCGAAGGCGGAGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAA 294188 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || || | || ||||| || || Sbjct 294187 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGG 294128 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| |||||||| | |||||| || || || || | || || || Sbjct 294127 ATTCCTTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATAGTATCAGACGACTCGACC 294068 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||| || || ||||||||||||||||| || ||||| Sbjct 294067 TCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 294021 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 68271 TCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAAT 68330 || || |||||||| || ||| || || | || ||||| | |||||| ||||| || Sbjct 294968 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAA 294909 Query 68331 ATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCC 68390 || |||| ||| ||||| || || || || ||||| || |||||||| | ||||| Sbjct 294908 ATAAGTCGTTGCTGGTCAGGAGGGATACCCTCCTTATCCTGAATCTTAGATTTGACATTG 294849 Query 68391 TCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACG 68450 |||||||| || | ||||| ||||||||||| || || ||||| || | ||||||||| Sbjct 294848 TCGATGGTATCAGAAGATTCGACTTCCAAGGTAATAGTCTTTCCAGTCAAGGTCTTGACA 294789 Query 68451 AATATCTGCAT 68461 || || ||||| Sbjct 294788 AAAATTTGCAT 294778 >seq36 Length=226857 Score = 116 bits (128), Expect = 7e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || || ||||| || ||||| || || | || || || | |||||| || ||||| || Sbjct 82973 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 82914 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || || || || || |||||||| ||||||||||| || || | |||||| ||| Sbjct 82913 AATCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCG 82854 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||| | || || || || | ||||||||| || ||||| || ||||||||||| Sbjct 82853 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAA 82795 Score = 98.7 bits (108), Expect = 2e-15 Identities = 414/642 (64%), Gaps = 15/642 (2%) Strand=Plus/Minus Query 30977 AGACAGCTCCCATGCGGTCTTGTAGATTGCCTTGAGCTCAGGGTGGATGCCAATGACAC- 31035 ||| | |||||| | |||||||||| ||||||| || | | |||| | || | Sbjct 156318 AGAAATCTCCCAAACAGTCTTGTAGAGAGCCTTGATGTCGGCGGGGAT---ATTGGGAAT 156262 Query 31036 GTT--GGATGGACCCCCCGTTGGCAATAATCTGGTTCTTCATGGCCTCGGACCACGTGCC 31093 ||| | ||||| || | |||||| || ||||||||||||| || ||||| || Sbjct 156261 GTTCTGAATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCAGACCAAAGACC 156202 Query 31094 ACGAGCGATGAGGTCGCGCACGAGGTAGTTGTTGACCACAGGGAACTCTCCAGCAAGGGT 31153 | ||| ||| || | ||| || |||||| || |||| || ||||| | | Sbjct 156201 CATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACCAGCCAAGAC 156142 Query 31154 CCGGCGGCTGTACAGATTAGAAGTGATCGGCTCCATAGC-CTCTACGGACCCGCAGATTT 31212 ||||| ||| | || || ||| ||||| | ||| ||| | || ||||| Sbjct 156141 ACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAA-AGCACTCATTGTTACCCAGGATTT 156083 Query 31213 GCGCGGTGGATGCGGTGGGCATCAGCGCGGTGGTCAGCGAATTCCTGACACC---CTTCT 31269 ||| ||| || ||||||||||| | ||| || ||| || | | ||| || || Sbjct 156082 GCGAGGTAGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACCGTGCTGCT 156023 Query 31270 TGACGCGCTCTTCGAGGGTCTTCCAGTCAAGGCGAGTTACC-GGCTCGGTTCCCCAGAGG 31328 ||| |||| | | | | | ||| || | | | | |||| | ||| | | Sbjct 156022 TGATCTGCTCCTTCAAGTTGTCCCACTCCCA-CAACTCAGAAGGCTTGACATTCCACATG 155964 Query 31329 TGATACTGCATCACACCACGAGACGCGGGAGACCCCTCAAAGGTAGGATGGGGACCGTGC 31388 | |||| | ||||| || |||||||| |||| ||||||| | ||| || ||| Sbjct 155963 TCGAACTGAAGAACACCTTCCGAGGCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGC 155904 Query 31389 TCTTCCGCGAGTTCGCAAGAGGCCTCCACCGCTGCAAAGTAAATATTCTCAAAGATTTCC 31448 |||| || || || |||||| || || || |||||| |||| || |||| | Sbjct 155903 TCTTTGGCCAGCTCAAGAGAGGCTGTCAGGGCAGCGTGGTAAATGGTCTCGAAAATTTGC 155844 Query 31449 CGGTTGAGGTTCTTGGCCGCGTCAGAGTCAAAAGGCATGCGCAGCTTGAAGAACA-CGTC 31507 |||||| | |||| || ||| || || ||||||||||| ||||| | |||| Sbjct 155843 TTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGCAG-AGCAAGAAAAGCGTC 155785 Query 31508 CTGAAGACCCTGGACACCCACTCCAATTGGGCGCCGGCGCATGTTACTAGTCTTCGCCTC 31567 ||||||||| ||||| || || || || || | |||||||| || | ||||| Sbjct 155784 GGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTC 155725 Query 31568 GGGAATTGCGTAGGACATGACGTCAATGCTCTTGTCGAGGTT 31609 ||| | ||| |||| || ||| |||||| |||||| Sbjct 155724 CTCAATGGGGTAATGGTTGACATCGATGATCTTGTTGAGGTT 155683 >seq31 Length=254643 Score = 105 bits (116), Expect = 1e-17 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 224974 GGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTG 225033 |||||| |||||||||| ||||||||| |||||| | || ||||| |||| | || | Sbjct 43405 GGCATATCGCCACTGGAGGTACTGGTTCGGGGTCTTCTCAAGGTGCATCTCCACGTGCTC 43346 Query 225034 GAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCG 225093 | || ||||| | ||| | ||||||| ||||||||||||| || | || | Sbjct 43345 CAGGGCGTGCTGCTTGATGTAACCGATGCGCAGGTTGGGATGCTTCTCGACTTTG-CCTG 43287 Query 225094 AGTCGGTTGTGC-CTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGG 225152 | || ||| || |||||||| | ||||||||| || | |||||||||||| |||| Sbjct 43286 TGGTGGGGATGCTTTCACCGGTGAGCAGCTTGATGAGGGTGGACTTGCCCGCACCGTTGG 43227 Query 225153 GGCCAATCACGCCAATCCGGGATGACA 225179 | || || | | | | ||||| |||| Sbjct 43226 GCCCGATGATGGCCACACGGGAAGACA 43200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921593461056640