Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq36 293 4e-74 seq3 147 4e-30 >seq36 Length=226857 Score = 293 bits (324), Expect = 4e-74 Identities = 1113/1717 (65%), Gaps = 65/1717 (4%) Strand=Plus/Minus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| ||||||||| |||||| | || |||| || | || |||||||||||| |||||| Sbjct 156512 ACGGTGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTG 156453 Query 243797 AGTCC--ACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTG 243854 || || ||| |||| | | |||||| | || | ||| ||| || | | Sbjct 156452 AGACCCAACTT--CCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCAT----AG--TAG 156401 Query 243855 GGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCT 243914 | || | | | ||| | ||||| |||||| |||||||| || | | || | Sbjct 156400 GATCCTTCATGT---GAACG---TTGAGCGACTGGGACTGGTCGATAAAAGCACCGCGAT 156347 Query 243915 CTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCT 243974 | |||||||| ||| | | |||||| ||||| | | |||||||||| | || Sbjct 156346 CGGCGGCCATCTGGATAACATGACGCTGAGAAATCTCCCAAACAGTCTTGTAGAGAGCCT 156287 Query 243975 TGAGGTGCTCGGGGAACCCTTCG--ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTG 244032 ||| || |||||| || | |||||||| | || || || | | | |||| | Sbjct 156286 TGATGTCGGCGGGGATA--TTGGGAATGTTCTGAATGGAACCGTTCTCGGCAATGATGCG 156229 Query 244033 GGTGCGCATGTTATCGTTCCACAGGCCCA-AGCGCTCCAGCGCCTCGACCAGGTGCCTG- 244090 | | |||| ||| ||| || |||| | || | || ||| || || ||| | Sbjct 156228 GTTCTTCATGGCATCAGACCAAAGACCCATATCGA-CGAGATCCTTGA---GGAGCCAGG 156173 Query 244091 --TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCG 244148 || || ||||| || || || | || || ||||||||||| | |||| || | Sbjct 156172 GGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATG 156113 Query 244149 GCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACA 244208 |||| | || ||| |||| ||||| || |||| || || || |||||||| | | Sbjct 156112 GCTCAAAGCACTCATTGTTACCCAGGATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGA 156053 Query 244209 CCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCC 244268 ||||| ||| | | |||||| || ||| | | | | || ||| |||| Sbjct 156052 GCAGCAACGAGTTGCGAATACCGTGCTGCTTGATCTGCTCCTTCAAGTTGTCCCACTCCC 155993 Query 244269 ACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC 244328 ||| | || ||| |||| ||||||||| ||||| || | | |||| | Sbjct 155992 ACAACTCAGA-AGGC--------TTGACATTCCACATGTCGAACTGAAGAA-CACCTTCC 155943 Query 244329 T-GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTG-GGCCAGCTTAC-AGC 244385 | |||| ||||| | |||| | |||||| || | || || |||||||| | || Sbjct 155942 GAGGCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTT-GCTCTTTGGCCAGCTCAAGAGA 155884 Query 244386 TCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCT 244445 ||| ||||| |||| ||| ||||||||||| || |||||| | || ||||||| Sbjct 155883 GGCTGTC-AGGGCAGCGTGGTAAATGGTCTCGAAAATTTGCTTGTTGAGCTCACGGGCCT 155825 Query 244446 TGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGA-CGTCGGCCAGTCCCTGCACGCCG 244504 | | |||||| |||| || | || ||| | ||||||| || ||||| || || Sbjct 155824 CGGGAGACTCGAAGGGCATGCGCAG-AGCAAGAAAAGCGTCGGCAAGACCCTGAACACCA 155766 Query 244505 ATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTG 244564 | |||||||||| |||||| ||||| | || || | ||||||| |||| Sbjct 155765 ACACCGATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTG 155706 Query 244565 CCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGA 244624 | ||||| | |||||||||||| ||| || || | || ||| ||| ||| Sbjct 155705 ACATCGATGATCTTGTTGAGGTTACGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGG 155646 Query 244625 AAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACG 244684 |||||||| || | || | || || || || | ||||| | Sbjct 155645 AAGTCGTAGC----GGCCTTCT------TTGTAGTCG--ACGAAGGCAGGCAGGGCAAGA 155598 Query 244685 CTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAG 244744 ||||| |||||| || || ||||| || | | ||||| | ||||| ||||| Sbjct 155597 GAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCAC 155538 Query 244745 AGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCC 244804 || ||| || ||||| ||||| | | || ||| ||| ||||||||| || Sbjct 155537 AGATTAGAGCTGCGAATGGTTCCCAGATTTTTCTGGTTGCTCTTCCTGTTGCAGGCATCT 155478 Query 244805 TTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGG 244864 ||||| ||||| ||||| || || ||| |||||| |||||| | || |||||| Sbjct 155477 TTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGCCTCGAGGATGGAGTACCAGAGC 155418 Query 244865 TCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCC 244924 | | || | ||| |||| | |||||| ||| || ||| || ||| Sbjct 155417 TTCTGGGCACGAATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCC 155358 Query 244925 TCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CACATGAGACT 244983 || ||||| ||| || || | ||||| |||||| || ||| |||||||| | Sbjct 155357 TCAAACTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACT-CGTTGGGACACATGAGGGT 155299 Query 244984 CCACTCGCCGCCGTCCTT--GACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGG 245041 ||| || ||| ||||| ||| | || |||||| || || |||||||| || || || Sbjct 155298 CCAATCCCCGT--TCCTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGG 155241 Query 245042 AAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCA 245101 |||||||| | | | | || ||| ||| |||||| | || || | ||||||| Sbjct 155240 AAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCA 155181 Query 245102 AAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCT 245161 || ||||| ||||||| ||||| | ||||| ||| | || || || ||||| ||||| Sbjct 155180 AACACGTCTGCGTGCCAAGGCTCGAGGTAGATAGCAAATGCACCAGGTCGCTTATTGCCG 155121 Query 245162 CCCTGGTCCACCATCCTCTCGAGCGC-GTTGAAGATGCGCAGGGTAGGCACTATGCCGTT 245220 |||||||| || || | || | |||||||| ||| || | || | |||||||| Sbjct 155120 CCCTGGTCAACGTATCTGGC-AGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTT 155062 Query 245221 AGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT 245280 || ||||||||||| ||||| | ||| || | | || | | || | || Sbjct 155061 GGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAA 155002 Query 245281 GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCC 245340 ||| | || || || ||||||||| | ||| ||| |||||| ||||| || || Sbjct 155001 GCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACC 154942 Query 245341 CTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCT 245400 || |||||||| |||||||| | || || ||||| |||||||| | |||| | Sbjct 154941 GTCAATGCTGTCGTCCTTCATGTCAACTAGGAAACAGGAAGACAGCTGACATTGGGGGGT 154882 Query 245401 GCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 | | |||||| || || || ||||||||| ||| Sbjct 154881 ACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAG 154845 >seq3 Length=584709 Score = 147 bits (162), Expect = 4e-30 Identities = 308/445 (69%), Gaps = 13/445 (3%) Strand=Plus/Minus Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 |||| | || | |||| || || | || || ||||||||||||||| || ||||| Sbjct 295230 TTCGCCCAGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGTGGTGCCTTT 295171 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGA 42811 || || || |||||||||||| || | ||| ||||||||| ||||||||||| ||||| Sbjct 295170 GCGTCGATTTTCTGGCTCAAGAAGCGTG-GTCTGATGCCCGGCCTCACCTTCTCTAACGA 295112 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871 ||| ||| | | || ||||| |||| | |||||||| || || || |||| || Sbjct 295111 ACTTATCTCCCGTGATGAGGGTTTGCACACAGACTTTGCATGTCTGTTGCACTCG---CA 295055 Query 42872 CCTCAGGCA-CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGA 42930 || | ||| | |||| | ||| | ||| || |||||||| || || || | | Sbjct 295054 TCTTAAGCACCGAGCCAGC-AAGCAAATTATCCAGGATATCATCACCGACGCTGTTGGCA 294996 Query 42931 TCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGAC 42989 | ||| | ||||| | || || | ||| |||||| | || | ||||||||| | Sbjct 294995 TTGAGCAAGAGTTTTTGACCGAGGCTCTG-CCGTGTGCTCTCCTAGGCATGAACGCCACA 294937 Query 42990 CTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCA 43047 || ||| |||| || || | | |||||||| | ||| | || || | ||| | Sbjct 294936 CTAATGAAGCAA-TATATTGAATTTGTCGCCGATCGTCTATTGGTTGCA-CTTGGTAACG 294879 Query 43048 GCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCA 43107 | ||||| || | ||||||||| || ||||||||||| || |||| |||| Sbjct 294878 AAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCA 294819 Query 43108 AGACCAACTTTTTCGAGAAGCGCGT 43132 |||| ||||| ||||||||||| || Sbjct 294818 AGACAAACTTCTTCGAGAAGCGAGT 294794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944309547749120