Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq9 125 2e-23 seq5 96.9 8e-15 seq36 89.7 1e-12 seq3 87.8 4e-12 >seq9 Length=455495 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| |||| || || || || || || || || | Sbjct 294247 CCACCTCGAAGGCGGAGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAA 294188 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || ||||| |||||||| |||||||| || | ||| Sbjct 294187 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGG 294128 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || ||||| || |||| || || || || |||| ||| ||| || || Sbjct 294127 ATTCCTTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATAGTATCAGACGACTCGACC 294068 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| ||||| || ||||||||||| || ||||| Sbjct 294067 TCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 294021 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || ||||| ||||||| | || || || || || | || || || || ||| Sbjct 294740 TCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAG 294681 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || | || || ||||| ||||| || || || | || || || Sbjct 294680 ATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGAATCTTAGACTTTACATTA 294621 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| ||||| ||||| | || || ||||| || |||| |||||||||| Sbjct 294620 TCGATCGTATCCGAGGATTCAACTTCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACG 294561 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 294560 AAGATCTGCAT 294550 >seq5 Length=531522 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 ||||| || || ||||| || |||||| || ||||| || || || | || || || Sbjct 177146 GTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCA 177205 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCT 288393 || ||||| || || || || || ||| || || || || |||||||| || | Sbjct 177206 GCAAAGATGAGTCGTTGCTGG---TCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGAC 177262 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || ||||| || || | ||| || || || || || |||||||||||||| || || Sbjct 177263 TTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGG 177322 Query 288454 GTCTTGACGAATATCTGCAT 288473 || |||||||| |||||||| Sbjct 177323 GTTTTGACGAAAATCTGCAT 177342 >seq36 Length=226857 Score = 89.7 bits (98), Expect = 1e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || || || || ||||||| || || || ||||| || | || || || ||||||||| Sbjct 82973 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 82914 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | ||||| ||| | || || || || || || |||||||| | || || || || Sbjct 82913 AATCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCG 82854 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | || || || || || || ||||| ||||| || ||||||||||||||||| Sbjct 82853 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAA 82795 >seq3 Length=584709 Score = 87.8 bits (96), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 269117 AAGAGTTCATTTGT--GACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCAT 269174 ||||||| |||| || ||| | || ||| || | | || ||||| ||| || || Sbjct 294989 AAGAGTT--TTTGACCGAGGCTCTGCCGTGTGCTCTCCTAGGCATGAACGCCACACTAAT 294932 Query 269175 GAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGT 269234 ||| |||||||| ||||| || || |||||| | || ||||| ||| | || || || Sbjct 294931 GAAGCAATATATTGAATTTGTCGCCGATCGTCTATTGGTTGCACTTGGTAACGAAAAGGT 294872 Query 269235 GTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAA 269294 ||||| | || ||||||| || ||||| ||||| | | || ||||| || Sbjct 294871 ATACAAAACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCAAGACAAA 294812 Query 269295 CTTCTTCGAAAAGCGTGTCAGCGACTATCAA 269325 ||||||||| ||||| || | || |||||| Sbjct 294811 CTTCTTCGAGAAGCGAGTTGGAGAATATCAA 294781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179616432823136