Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq36 268 1e-66 seq3 109 7e-19 seq79 82.4 9e-11 >seq36 Length=226857 Score = 268 bits (296), Expect = 1e-66 Identities = 1135/1772 (64%), Gaps = 33/1772 (2%) Strand=Plus/Minus Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624 ||||||| |||||| || |||| | || | ||||||||| ||||||||||| | Sbjct 156508 TGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTGAGAC 156449 Query 113625 CCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 113684 || ||||||| || | ||||| |||| | |||| | || ||| | |||| Sbjct 156448 CCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGATCCTTCATGT 156389 Query 113685 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCA 113744 | ||| | ||||| || ||||| || || ||||| || ||||| | || | Sbjct 156388 GAACGTTGAGCGACTGGGACTGGTCGATAAAAGCACCGCGATCGGCGGCCATCTGGATAA 156329 Query 113745 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 113804 ||| | || ||||| ||||| ||||||| ||| || || | ||||||| Sbjct 156328 CATGACGCTGAGAAATCTCCCAAACAGTCTTGTAGAGAGCCTTGATGTCGGCGGGGATAT 156269 Query 113805 CCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGA---GATCCTTCATATCCTTTG 113861 || || || ||||| ||| || | | |||| | | |||||| | | | Sbjct 156268 TGGGAATGTTCTGAATGGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCAG 156212 Query 113862 ACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCAC 113921 |||| ||||| || | |||||||| | ||| ||||| || || |||| Sbjct 156211 ACCAAAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCAC 156152 Query 113922 CCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 113981 | || | | || | | | || || |||| ||||||||||||||||||||||||||||| Sbjct 156151 CAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTAC 156092 Query 113982 CCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGAC 114041 ||| |||||| | ||| ||||| ||||||||||| || | || | ||| || | || Sbjct 156091 CCAGGATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATAC 156032 Query 114042 CCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGT--TGAGCTTTGTCTCCCC 114099 | | | | | || | ||||| | | |||||| || | | || | || | Sbjct 156031 CGTGCTGCTTGATCTGCTCCTTCAAGTTGTCCCACTCCCACAACTCAGAA--GGCTTGAC 155974 Query 114100 CTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTA 114159 | |||||| || ||||| || | ||||| ||||| || || |||| || || ||| Sbjct 155973 ATTCCACATGTCGAACTGAAGAACACCTTCCGAGGCGGGAGAGCCCTTGAAGGTAGAGTA 155914 Query 114160 TGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG-AGGGCTGCGTGATACATTGTCT 114218 ||||| | | | |||| || || | || ||||| ||||| || || |||| Sbjct 155913 GGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTGTCAGGGCAGCGTGGTAAATGGTCT 155855 Query 114219 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-A 114277 | ||||| | || | | ||||||| || || || | | || || | | Sbjct 155854 CGAAAATTTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCG-CAGAGCA 155796 Query 114278 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 114337 | ||| | || || ||||| || ||||| | || || || ||||||| ||| || Sbjct 155795 AGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCTG 155736 Query 114338 TTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 114397 || ||||| ||| | ||| ||| || |||||| | | | || || || | | Sbjct 155735 TTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCGATGATCTTGTTGAGGTTACGGACG 155676 Query 114398 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT-GAC 114456 || || | || | || || ||||| | | | || | | || ||| | | | ||| Sbjct 155675 ACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCT-TCTTTGTAGTCGAC 155617 Query 114457 ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTA 114516 | ||| ||||| | || |||| || || |||| |||||| || ||| Sbjct 155616 GAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTA 155557 Query 114517 CTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGA 114576 ||| || || ||||| |||| ||| || || |||||| |||| || || || || Sbjct 155556 CTCAATGATCTCCGTGCACAGATTAGAGCTGCGAATGGTTCCCAGATTTTTCTGGTTGCT 155497 Query 114577 CTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTT 114636 ||| |||| || ||||| ||||| ||||| | || | ||||| || || |||| || Sbjct 155496 CTTCCTGTTGCAGGCATCTTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGCCTC 155437 Query 114637 GAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCT 114695 ||| || | | ||||| | || | ||| | | ||| | | | || ||||| || Sbjct 155436 GAGGATGGAGTACCAGAGCTTCTG-GGCACGAATAGTCTTGCGGCCACGGCCCTCACGCT 155378 Query 114696 CGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCT 114755 | ||||| |||||| || |||||||| || || | || | || || || || Sbjct 155377 CATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACT 155318 Query 114756 TATCTGGGCAGAAGAGAGACCATTGACCACCCTCCT--CAACACGCTTCATGAAGAGGTC 114813 | || || | ||| | ||| | || | |||| | || ||||||||||| || || Sbjct 155317 CGTTGGGACACATGAGGGTCCAAT--CCCCGTTCCTTTCGACGCGCTTCATGAAAAGATC 155260 Query 114814 TGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAG 114873 ||||||||| ||||| |||||| || ||| || |||||| | || || || Sbjct 155259 TGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTT 155200 Query 114874 ACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGA 114933 ||||| || | |||||| | | || |||||||| || || ||||| | || | || Sbjct 155199 TCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATAGCAAATGC 155140 Query 114934 CCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAG 114990 || || | || |||||| || || || || ||| || || |||||||| Sbjct 155139 ACCAGGTCGCTTATTGCCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGAAG 155080 Query 114991 CATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCT 115050 ||| |||||||| || | ||| || || || || ||| ||| |||| | Sbjct 155079 CATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTGGCACG 155020 Query 115051 GACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGT 115110 || |||| || || || ||||| || ||| ||| ||||| || || | | Sbjct 155019 GATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTT 154960 Query 115111 GAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGA 115170 |||| || ||||||| ||||| || ||| |||| | | | ||||| ||| || Sbjct 154959 GAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCAACTAGGAAACAGGAAGA 154900 Query 115171 CATTTGTGGCCTT--GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATA 115228 || || | || || ||||||||||||||||| || |||| |||||| ||| | | Sbjct 154899 CA--GCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGA--AGA 154844 Query 115229 CCTTG--GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATAC 115286 |||| |||||| | ||| |||||||| ||| |||| || || ||||| Sbjct 154843 GCTTGCTGGACATGAGGTGGTAAGTCTCCAAAACGCGTTCGATGTTGTCTCCCCAAATAC 154784 Query 115287 CGATCGAGACCCGCATAAACATGTATTGGGGT 115318 ||| || || ||||||| ||||| || ||| Sbjct 154783 CGACCGCAACGCGCATAATCATGTGCTGAGGT 154752 >seq3 Length=584709 Score = 109 bits (120), Expect = 7e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| ||| ||| | |||||| ||||||||||| ||||| || |||||| || || Sbjct 295073 GCAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGGCCG 295132 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| ||||| |||||||| | ||||||||||| ||| | ||| ||||||||| Sbjct 295133 GGCATCAGACCACGCTTCTTGAGCCAGAAAATCGACGCAAAGGCACCACTGAAGAAGATG 295192 Query 126167 CCCTCCACACACGCGAACGC 126186 ||||||||| ||||| || Sbjct 295193 CCCTCCACAGCAGCGAAAGC 295212 >seq79 Length=145246 Score = 82.4 bits (90), Expect = 9e-11 Identities = 164/237 (69%), Gaps = 12/237 (5%) Strand=Plus/Minus Query 10960 ACCGACGGCGTCAATTTCATCGATGAAAACGATACACGG----TTGATTTTCACGGGCAA 11015 ||| | ||| || | ||| |||||||||| ||| | || ||| ||| |||| Sbjct 71150 ACCAATGGCATCCAGTTCGTCGATGAAAATGATGGAAGGCGACTTGGCTTT----GGCAG 71095 Query 11016 CTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG 11075 | |||| |||||||||| ||| ||||| ||||| ||||| ||||| | || || Sbjct 71094 CACTGAAGAGCTCTCGGACTCGCTTAGCACCTACACCGACAAAGATTTCGTCGAA-TTCA 71036 Query 11076 CGGCGGAACAT-TGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGG 11134 | | |||| | || |||||| ||| | |||||| || | |||||| || || || Sbjct 71035 CTACCAGACATGTAGAAGAAGGGCACGCCAGCTTCACCGGCCACGGCTCGCGCAAGTAGA 70976 Query 11135 GTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGG-ATCCTGGCACC 11190 ||||||||||| || || ||| | ||||| |||| | |||| | | ||||||| Sbjct 70975 GTCTTCCCCGTTCCCGGAGGCCCAACCAGAAGAACACC-CTTGGGCAACTTGGCACC 70920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597334843096960