Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq36 269 3e-67 >seq36 Length=226857 Score = 269 bits (298), Expect = 3e-67 Identities = 1082/1680 (64%), Gaps = 74/1680 (4%) Strand=Plus/Plus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||||| |||||| |||||||||| || || || ||||| | | |||| | | | Sbjct 154687 TACTTTGGCTTCAAGACTCTGGAGAGATCATATCTTCTCAAACTCAACGGCAAGATCGTC 154746 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 |||||||| || || || | |||||||| || |||| ||| || || |||| || Sbjct 154747 GAGCGACCTCAGCACATGATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACAT--CG 154804 Query 93844 AATG--TTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCGA 93901 || | ||||| | ||| | |||| |||| | ||| ||| | || | Sbjct 154805 AACGCGTTTTGGAGACTTACCACCTCATGTCCAGCAAGCTCTTCACCCACGCCTCACCTA 154864 Query 93902 CCCTGTTCAACGCGGGGACCCCGGTGCCA----CAGATGTCTTCGTGTTTCCT-GATGAC 93956 | || |||||||| || ||||| ||| ||| ||||||| |||||||| | |||| Sbjct 154865 CACTCTTCAACGCTGGTACCCC----CCAATGTCAGCTGTCTTCCTGTTTCCTAGTTGAC 154920 Query 93957 GAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTC 94016 | |||| |||| ||| ||| || | ||||| |||||| |||||| | ||||| Sbjct 154921 -ATGAAGGACGACAGCATTGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTC 154979 Query 94017 AAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACAT 94076 || || || || ||||| | | |||||| | | ||||||| || || ||||| Sbjct 154980 CAAGATGGCTGGTGGTATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGCTCTTACAT 155039 Query 94077 CCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGC 94136 ||| ||||| || || ||||||||| || | || ||||| || |||||||||||| | Sbjct 155040 TGCCGGCACCAACGGTACATCCAACGGCATCATTCCCATGCTTCGCGTCTTCAACAACAC 155099 Query 94137 GGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGA 94196 || | ||||| |||||||| || | | | ||| | || || |||| ||||| Sbjct 155100 TGCCAGATACGTTGACCAGGGCGGCAATAAGCGACCTGGTGCATTTGCTATCTACCTCGA 155159 Query 94197 GCCCTGGCACGCGGACGTG-CAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATC 94255 ||| |||||||| |||||| | ||||| | || ||||||||||||||||||| || Sbjct 155160 GCCTTGGCACGCAGACGTGTTTGACTTTC-TTGATTTGCGAAAGAACCACGGCAAGGAAG 155218 Query 94256 TGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCG 94315 | | || | ||||||||| ||||| ||| | ||||| ||||| ||||| |||| Sbjct 155219 AAAACCGTGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTTTTCATGAAGCGCG 155278 Query 94316 TCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACG 94375 |||| | ||| | |||| || | |||||||| || || || || ||| | || Sbjct 155279 TCGAAAGGAACGGGGATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGA-- 155336 Query 94376 TTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGA--------ATCG-CAGGGCA 94426 ||| || || || || || | |||| ||||| | || ||||| Sbjct 155337 -TTG-CTATGGC-----GAGGAGTTTGAGGCTCTCTACGAGAAGTATGAGCGTGAGGGCC 155389 Query 94427 AGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486 | | | ||| ||| ||| |||||| ||| | ||| | || | ||| | Sbjct 155390 GTGGCCGCAAGACTATTCGTGCCCAGAAGCTCTGGTACTCCATCCTCGAGGCCCAGACCG 155449 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGC 94546 | ||||| | |||| || ||| ||| || | |||| ||| ||||||| | Sbjct 155450 AAACGGGCAACCCCTTTATGCTGTACAAAGATGCCTGCAACAGGAAGAGCAACCAGAAAA 155509 Query 94547 ACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 | || || || ||||| ||||||||||| ||||| | ||||| | | || | Sbjct 155510 ATCTGGGAACCATTCGCAGCTCTAATCTGTGCACGGAGATCATTGAGTACTGTGCCCCTG 155569 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCT 94666 | ||| ||||||| || ||| ||| ||| | |||| | | ||||| ||| || Sbjct 155570 ATGAGGTTGCTGTTTGCAACTTGGCCTCTCTTGCCCTGCCTGCCTTCGT-CGA-----CT 155623 Query 94667 AC-ACGTCTACTGCTTCG--TTC---GATCTGGAGGAGCTTGTGAACTTCGCGGGAAG-G 94719 || | | | ||| || ||| | || | ||| ||| ||| ||| | Sbjct 155624 ACAAAGAAGGCCGCTACGACTTCCAGAAGCTCCACGAG---GTG-ACT------CAAGTG 155673 Query 94720 ATGGTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAG 94779 | ||| ||||| |||| | | ||||| ||| |||||| | |||||| Sbjct 155674 GTCGTCCGTAACCTCAACAAGATCATCGATGTCAACCATTACCCCATTGAGGAGGCTCGC 155733 Query 94780 AACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTG 94839 ||| ||| || ||||| |||||||| | || || |||||| | || ||||| | Sbjct 155734 AACAGCAACATGCGACATCGACCCATCGGTGTTGGTGTTCAGGGTCTTGCCGACGCTTTT 155793 Query 94840 GTGATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTC 94899 | |||| |||||| ||| ||| ||| || | | || | | || ||| Sbjct 155794 CTTGCTCTGCGCATGCCCTTCGAGTCTCCCGAGGCCCGTGAGCTCAACAAGCAAATTTTC 155853 Query 94900 GAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGG 94959 || | |||||| ||| ||| ||| | || | | |||||| | | | ||| Sbjct 155854 GAGACCATTTACCACGCTGCCCTGACAGCCTCTCTTGAGCTGGCCAAAGAGCAAGGC--- 155910 Query 94960 CCACACGAATCGTTCCGCGGATCGC---CCTTGGAACAGGGCATTTTTCAGTTCGACCTC 95016 || || | ||| || || | ||| |||| || || ||||||||||| | Sbjct 155911 CCCTACTCTACCTTCAAGGGCTCTCCCGCCTCGGAA---GGTGTTCTTCAGTTCGACATG 155967 Query 95017 TGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGG--AAGCTCTACGCGCTGATGTTATCA 95074 ||| ||| ||||| || | ||| || |||| || | | | || || | | Sbjct 155968 TGGAATGTCAAGCCTTCTGAGTTGTGGGAGTGGGACAACTTGAAGGAGCAGA--TCAAGC 156025 Query 95075 AACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGA 95134 | |||||| | ||| || |||| | || ||||||||||| ||||| || |||| | Sbjct 156026 AGCACGGTATTCGCAACTCGTTGCTGCTCGCTCCCATGCCCACCGCCTCTACCTCGCAAA 156085 Query 95135 TCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGC 95194 |||| || ||||| |||| || || || | ||| |||||| | ||| | | || || Sbjct 156086 TCCTGGGTAACAATGAGTGCTTTGAGCCATACACGTCCAACATTTACCAGCGCCGTGTCT 156145 Query 95195 TCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTC--TCTGGG 95252 | || || ||||||| ||| ||||| ||||| ||| || |||| | |||| Sbjct 156146 TGGCTGGTGAATTCCAGGTCGTCAACCCCTGGCTCCTCAAGGATCT--CGTCGATATGGG 156203 Query 95253 TGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACAT 95312 | | ||| ||| | ||||||| | | || ||||| ||| | |||||||| Sbjct 156204 TCTTTGGTCTGATGCCATGAAGAACCGCATCATTGCCGAGAACGGTTCCATTCAGAACAT 156263 Query 95313 CCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 || | || || | ||||||||||| ||||||||||| || |||||||| | ||||| Sbjct 156264 TCCCAATATCCCCGCCGACATCAAGGCTCTCTACAAGACTGTTTGGGAGATTTCTCAGCG 156323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494707665691520