Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq36 244 1e-59 seq5 113 4e-20 seq9 95.1 1e-14 seq3 82.4 8e-11 >seq36 Length=226857 Score = 244 bits (270), Expect = 1e-59 Identities = 940/1451 (65%), Gaps = 43/1451 (3%) Strand=Plus/Minus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| || || || || || ||||| || || | | || | ||| ||| | | Sbjct 156172 GGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATG 156113 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | |||||| | || || || || || ||||| | || | ||||| |||||| || | Sbjct 156112 GCTCAAAGCACTCATTGTTACCCAGGATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGA 156053 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206 || ||| || || || | |||||| ||| || | | |||||||| | ||| ||| Sbjct 156052 GCAGCAACGAGTTGCGAATACCGTGCTGCTTGA-TCTGCTCCTTCAAGTTGTCCCACTCC 155994 Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT--CGACTGGCGG 153264 |||| | | || || | | |||||||||||| |||| | || ||| ||| ||||| Sbjct 155993 CACAACTCAGAAGGCTTGACATTCCACATGTCGAACTGAAGAACACCTTCCGA--GGCGG 155936 Query 153265 GACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCG- 153323 || ||| || ||| |||| ||| | || |||||| || || || || Sbjct 155935 GAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTGTC 155877 Query 153324 AGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGA--ACGGCCGCTTCTTCGC 153381 || || | | ||| ||||| ||| ||||| || ||||| |||| || || Sbjct 155876 AGGGCAGCGTGGTAAATGGTCTCGAAAATTTGCTTGTTGAGCTCACGG--GCCTCGGGAG 155819 Query 153382 TCTCGTACGGCATGCGCAGCAGCAC-AAAGGCGTCGGCCAGACCCTGGATACCGACGCCG 153440 |||| | ||||||||||| |||| ||| |||||||| |||||||| | ||| || ||| Sbjct 155818 ACTCGAAGGGCATGCGCAG-AGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCG 155760 Query 153441 ATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCG 153500 ||||||||||| | ||||||| | || | | ||||| || || ||| |||| Sbjct 155759 ATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCG 155700 Query 153501 ATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCA 153560 || || ||||||||||| || || ||||||| ||| | | | | || |||| ||| || Sbjct 155699 ATGATCTTGTTGAGGTTACGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCG 155640 Query 153561 TAG-GTCAT--TTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAG 153617 ||| | | | || || | || ||| | | || ||||| ||| |||| || || Sbjct 155639 TAGCGGCCTTCTTTGTAGTCG---ACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAA 155583 Query 153618 ACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTT---GCTGCAT 153674 || || ||| || | | | | ||||| | |||||| | ||| || || ||||| Sbjct 155582 ACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGATTAGAGCTGC-- 155525 Query 153675 TTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATG 153734 ||| |||| ||||| ||| ||||| || | ||||| || |||||| | ||||| Sbjct 155524 -GAATGGTTCCCAGATTTTTCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTACAGCATA 155466 Query 153735 TACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTCCTGCGCTCGC 153794 | || ||| || ||| || | |||| ||| | || | ||| || || Sbjct 155465 AAGGGGTTGCCCGTTTCGGTCTGGGCCTCGAGGATGGAGTACCAGAGCTTCTGGGCACGA 155406 Query 153795 ACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCG 153854 | || || |||||||| | ||| || |||||| || ||||||||| ||| Sbjct 155405 ATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCG 155346 Query 153855 CCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCG 153914 || ||||| || || ||||| || |||| | |||||||| || | ||| ||| || Sbjct 155345 CCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCA---ATCCCCG 155289 Query 153915 -GCGTT--GACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGC 153971 | || |||||| |||||| ||||| || | ||| || || | ||||||||| Sbjct 155288 TTCCTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGA 155229 Query 153972 GCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCG 154031 || | || ||| ||| ||| | || || || | | | | | ||| ||| Sbjct 155228 GCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCG 155169 Query 154032 TGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACG 154088 ||||| || || | ||||| || | ||||| ||| || |||||||| || ||| Sbjct 155168 TGCCAAGGCTCGAGGTAGATAGCAAATGCACCAGGTCGCTTATTGCCGCCCTGGTCAACG 155109 Query 154089 TGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTG 154148 | | | | |||||||||||||| | |||||| | |||| | | || |||||| Sbjct 155108 TATCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGTTG 155049 Query 154149 GTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCC- 154207 || || | |||| ||| || | | || ||||| | ||| || || || Sbjct 155048 GTGCCGGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCA 154989 Query 154208 GCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATC 154267 ||| | ||| || || || ||| || || |||||| ||||| ||||| || Sbjct 154988 GCCAT-CTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTC 154930 Query 154268 GTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGA-AT--GCGCGTTCCCGCCGA 154324 ||| | | | | | |||||| ||| ||| || || || | | || || || Sbjct 154929 GTCCTTCATGTCAACTAGGAAACAGGAAGACA---GCTGACATTGGGGGGTACCAGCGTT 154873 Query 154325 AAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGAT 154384 ||||| || || ||||| || || || || | ||| | | |||| || || | Sbjct 154872 GAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAAGTCTCCAA 154813 Query 154385 GGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGG 154444 || |||||| | || || ||| |||| ||| |||||||| | ||||||||| || Sbjct 154812 AACGCGTTCGATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGAGG 154753 Query 154445 ACGTTCGGCGA 154455 || ||| ||| Sbjct 154752 TCGCTCGACGA 154742 >seq5 Length=531522 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| || || |||||||| || ||||| | | | Sbjct 177151 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAA 177210 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| || || || |||||||| || || || || ||||| ||| || || | | Sbjct 177211 GATGAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 177270 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||||| ||||||||||| | || | ||| || || || || ||||| || Sbjct 177271 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGAC 177330 Query 138603 AAAAATCTGCAT 138614 ||||||||||| Sbjct 177331 GAAAATCTGCAT 177342 >seq9 Length=455495 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| ||||||||||| || | ||| || ||||||||| || || || | Sbjct 294216 TTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCAG 294157 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTT 138536 ||||||||||||| ||||| || || || ||||| ||||| ||| | || | || Sbjct 294156 CGAAGATTAGACGCTGCTGGTCAGGGGGGATTCCTTCCTTGTC-CTGAATCTTCGACTTG 294098 Query 138537 TAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 |||| || | || || | |||||| ||||||| || | || || || || || || Sbjct 294097 ACATTG-TCAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGT 294039 Query 138597 TTTTACAAAAATCTGCATGG 138616 || || || || ||||||| Sbjct 294038 CTTGACGAAGATTTGCATGG 294019 Score = 82.4 bits (90), Expect = 8e-11 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 ||||| || |||||||||||||||| || || ||| || || || || |||| | | Sbjct 294968 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAA 294909 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATT 138541 || || || || ||||| ||||| ||||| || || || ||| | || | ||| ||| Sbjct 294908 ATAAGTCGTTGCTGGTCAGGAGGGATACCCTCCTTATC-CTGAATCTTAGATTTGACATT 294850 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 | || | ||| || | || || || || | || | || || ||||||| || || | Sbjct 294849 G-TCGATGGTATCAGAAGATTCGACTTCCAAGGTAATAGTCTTTCCAGTCAAGGTCTTGA 294791 Query 138602 CAAAAATCTGCAT 138614 ||||||| ||||| Sbjct 294790 CAAAAATTTGCAT 294778 >seq3 Length=584709 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 52635 GAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCG-CAGTCCATGTG 52693 |||||||| || | || |||||| | || || ||||||||||| || | ||| Sbjct 294987 GAGTTTTTGACCGAGGCTCTGCCGTGTGCTCTCCTAGGCATGAACGCCACACTA-ATGAA 294929 Query 52694 CGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGT-GCAGCTCGGGCAGCCAAAGTACT 52752 | || || || ||||| || |||||||| ||||| ||| || || | |||| | Sbjct 294928 GCAATATATTGAATTTGTCGCCGATCGTCTATTGGTTGCA-CTTGGTAACGAAAAGGTAT 294870 Query 52753 TCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAG-GGCAAGACCAAC 52811 ||| | ||| || || || || ||| | |||||||| |||| | |||||||| ||| Sbjct 294869 ACAAAACCGCCAACCCCTTCGATTTCATGGAGAACATTTC-CTTGGGTGGCAAGACAAAC 294811 Query 52812 TTTTTCGAGAAGCGAGTCGGCGAGTAT 52838 || |||||||||||||| || || ||| Sbjct 294810 TTCTTCGAGAAGCGAGTTGGAGAATAT 294784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496246817360640