Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq5 125 7e-24 seq36 122 8e-23 seq9 104 2e-17 seq3 104 2e-17 >seq5 Length=531522 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | || ||| || || || ||||| |||| | Sbjct 177116 CCACCACGAAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 177175 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || ||||| |||| | ||| ||||| || || || Sbjct 177176 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGTTGCTGGTCCGGGGGA 177235 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| |||| |||| |||||| | | ||| || Sbjct 177236 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATGGTGTCGGAAGACTCCAC 177294 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||| || || || || ||||| || ||||||||||| Sbjct 177295 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 177342 >seq36 Length=226857 Score = 122 bits (134), Expect = 8e-23 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || ||||| ||||| ||| || || ||| || || ||||| || |||||| ||||| Sbjct 82973 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 82914 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 |||||||||||||| || || |||||||||||||| |||||| ||||| | ||| Sbjct 82913 AATCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCG 82854 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||||| |||||| || | ||| | || ||||| |||||||| || || ||| Sbjct 82853 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAAA 82794 Query 127106 ATCTGCATGGCTTATT 127121 ||| |||| |||| Sbjct 82793 --CTGAATGGTGTATT 82780 Score = 102 bits (112), Expect = 8e-17 Identities = 622/976 (64%), Gaps = 41/976 (4%) Strand=Plus/Minus Query 145852 TTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCCATGTCTAT--CATGC 145909 || || || ||| ||| || || |||| | | || ||||||||||| | || |||| Sbjct 156383 TTGAGCGACTGGGACTGGTCGATAAAAGCACCGCGATCGGCGGCCATCTGGATAACATG- 156325 Query 145910 ACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGT--GCTGGGGTATTTC 145967 || ||| ||| ||||| | || || ||||| |||||| || || ||| |||| Sbjct 156324 ACGCTGAGA-AATCTCCCAAACAGTCTTGTAGAGAGCCTTGATGTCGGCGGGGATATTGG 156266 Query 145968 GTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAATTCTGGAGTGTA 146027 | ||||||||| | || || || ||||| | || ||| || | || | Sbjct 156265 G--AATGTTCTGAATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCAGACCA 156208 Query 146028 AATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGC 146087 || || || ||||| |||||| ||| | ||||||| ||||| || || || || Sbjct 156207 AAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACCAGC 156148 Query 146088 GAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAG 146147 | || || | | | || | |||| ||| | ||||| || |||| |||||||| || Sbjct 156147 CAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTACCCAG 156088 Query 146148 TATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207 || |||| || | ||||| |||||| || | |||||| ||||| | | ||||| Sbjct 156087 GATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACCGTG 156028 Query 146208 -TCTTTGAATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATAT 146266 | |||| ||| ||| | ||| ||| | |||||| | | | || | || || Sbjct 156027 CTGCTTGA-TCTGCTCCTTCAAGTTGTCCCACTCCCACAACTCA---GAAGGCTTGACAT 155972 Query 146267 TGTAGTTGTCGTAATGCATAG----TGCCGCGGAACAGGGG-GCTATTCTCGTACGATTC 146321 | | ||||| | || | | | ||| || | || | || || | || | Sbjct 155971 TCCACATGTCGAACTGAAGAACACCTTCCGAGG--CGGGAGAGCCCTTGAAGGTAGAGT- 155915 Query 146322 ATAAGGACCGTCGATCTT-GGCCAGTTCGCAGCTAG-CTTCCAGAGCCGAAAAGTATATG 146379 ||| | | | |||| |||||| || || || || ||| || | ||| ||| Sbjct 155914 ---AGGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTGTCAGGGCAGCGTGGTAAATG 155859 Query 146380 GTCTCCGCGATCATGTAGTTGACGCTC-CTGGCCTCCTCGCTGTCGTAGGGGATATCGAG 146438 ||||| || | ||||| |||| | |||||| ||| |||| || || Sbjct 155858 GTCTCGAAAATTTGCTTGTTGA-GCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGCAG 155800 Query 146439 AAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTT 146498 | | ||| |||||||| |||||||| | || ||||| | ||| || ||| | |||| Sbjct 155799 AGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTT 155740 Query 146499 ACTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACG 146558 ||||| ||| || || |||| || |||||| ||||||||||||||||| ||||| Sbjct 155739 GCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCGATGATCTTGTTGAGGTTACG 155680 Query 146559 CACGACAATTTTCGTCAAACGATTCAG---CAGGACATAGTCAAATGTTTTAGTTTTAAC 146615 ||||| | || |||| | || | ||| | || | | || || || Sbjct 155679 GACGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGT-AGCGGCCTTCTTTGTA-- 155623 Query 146616 GTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTC 146675 || |||| | | ||| | |||||||||||| || || ||| ||| || | | Sbjct 155622 GTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGC 155563 Query 146676 GCAATACTGCACAATCTCGGCGCAGAGGTT---GCTGCACTTGATGATGCCCAAAttttt 146732 || |||| | ||||| | ||| || || ||||| ||| | |||| |||||| Sbjct 155562 ACAGTACTCAATGATCTCCGTGCACAGATTAGAGCTGC---GAATGGTTCCCAGATTTTT 155506 Query 146733 ttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGAC 146792 ||||| || | ||||||||| || ||||| ||||| | || || |||||| Sbjct 155505 CTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTACAGCATAAAGGGGTTGCCCGTTTCGGT 155446 Query 146793 ATTGGTCTCGACGATG 146808 | || ||||| |||| Sbjct 155445 CTGGGCCTCGAGGATG 155430 >seq9 Length=455495 Score = 104 bits (114), Expect = 2e-17 Identities = 142/197 (72%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || |||||||| ||| | || || ||| || ||||| || ||| Sbjct 294518 GTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCTTCCAGCTGCTTACCA 294459 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | ||||||||||||||||| ||||| || |||||||| ||| || ||| |||| Sbjct 294458 GCGAAAATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGAATCTTCGACTTG 294399 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | |||||| || | ||| | || || ||||||| ||| Sbjct 294398 ACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTC 294339 Query 127097 TTTACAAAAATCTGCAT 127113 || |||| || ||||| Sbjct 294338 TTGACAACTAT-TGCAT 294323 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| || ||||| | |||||||| || ||||||||||| ||| | Sbjct 294776 CCACCCCGCAGACGCAGGACTAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGAC 294717 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || ||||| |||| | ||||||||| || || || Sbjct 294716 AAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 294657 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||| || || || ||| | | |||| || |||| || ||| Sbjct 294656 ATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAGGATTCAACT 294597 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| |||| ||| || || || |||||||| Sbjct 294596 TCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 294550 >seq3 Length=584709 Score = 104 bits (114), Expect = 2e-17 Identities = 300/458 (66%), Gaps = 19/458 (4%) Strand=Plus/Minus Query 47133 GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCG 47192 ||| | || ||| | |||||||| || |||||| |||||||| || ||||||| Sbjct 295227 GCCCAGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGTGGTGCCTTTGCG 295168 Query 47193 GCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTA 47252 |||| || | | || | || | |||||||||||||| || ||||| || Sbjct 295167 TCGATTTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAACGAACTT 295108 Query 47253 ATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCT---ACTA-CAACACTAG 47308 ||||| | || || || ||||||| ||||||| ||||| | ||| || | || Sbjct 295107 ATCTCCCGTGATGAGGGTTTGCACACAGACTTTGCATGTCTGTTGCACTCGCATCTTAAG 295048 Query 47309 AGTCGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCAT 47368 ||| | | | || | || || || | |||| || || | ||| Sbjct 295047 CACCGAGCCAG-------CAAGCAAATTATCCAGGATATCATCACCGACGCTGTTGGCAT 294995 Query 47369 TGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGAT 47428 |||| |||||||| ||||||||||||| || | | || |||||||| | Sbjct 294994 TGAGCAAGAGTTTTTGACCGAGGCTCTGCCGTGTGCTCTCCTAGGCATGAACGCCACACT 294935 Query 47429 GATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT-CA---GCTAAAGTATC 47484 |||| | || || |||||||||||||| || || | ||| || | ||| | | Sbjct 294934 AATGAAGCAATATATTGAATTTGTCGCCGATCGTCTATTGGTTGCACTTGGTAACGAA-- 294877 Query 47485 CCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCA 47544 ||| | ||| | |||| || || ||||| || ||| | |||||||| | | |||| Sbjct 294876 --AAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCA 294819 Query 47545 AGACCAACTTTTTCGAGAAGCGCGTCGGCGAATATAAA 47582 |||| ||||| ||||||||||| || || |||||| || Sbjct 294818 AGACAAACTTCTTCGAGAAGCGAGTTGGAGAATATCAA 294781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475485869274880