Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq36 259 6e-64 seq3 116 5e-21 >seq36 Length=226857 Score = 259 bits (286), Expect = 6e-64 Identities = 1137/1773 (64%), Gaps = 35/1773 (2%) Strand=Plus/Minus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 ||||||| |||||| || |||| | || | ||||||||| ||||||||||| | Sbjct 156508 TGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTGAGAC 156449 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 || ||||||| || | ||||| |||| | |||| | || ||| | |||| Sbjct 156448 CCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGATCCTTCATGT 156389 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 | ||| | ||||| || ||||| || || ||||| || ||||| | || | Sbjct 156388 GAACGTTGAGCGACTGGGACTGGTCGATAAAAGCACCGCGATCGGCGGCCATCTGGATAA 156329 Query 115706 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 115765 ||| | || ||||| ||||| ||||||| ||| || || | ||||||| Sbjct 156328 CATGACGCTGAGAAATCTCCCAAACAGTCTTGTAGAGAGCCTTGATGTCGGCGGGGATAT 156269 Query 115766 CCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGA---GATCCTTCATATCCTTTG 115822 || || || || || ||| || | | |||| | | |||||| | | | Sbjct 156268 TGGGAATGTTCTGAATGGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCAG 156212 Query 115823 ACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCAC 115882 |||| ||||| || | |||||||| | ||| ||||| || || |||| Sbjct 156211 ACCAAAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCAC 156152 Query 115883 CCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 115942 | || | | || | | | || ||||||| ||||||||||||||||||||||||||||| Sbjct 156151 CAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTAC 156092 Query 115943 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGAC 116002 ||| |||||| | || ||||| ||||||||||| || | || | |||||| | || Sbjct 156091 CCAGGATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATAC 156032 Query 116003 CCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGT--TGAGCTTTGTCTCCCC 116060 | | | | || | ||||| | | |||||| || | | || | || | Sbjct 156031 CGTGCTGCTTGATCTGCTCCTTCAAGTTGTCCCACTCCCACAACTCAGAA--GGCTTGAC 155974 Query 116061 CTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATA 116120 | |||||| || ||||| || | ||||| || || || || |||| || || || Sbjct 155973 ATTCCACATGTCGAACTGAAGAACACCTTCCGAGGCGGGAGAGCCCTTGAAGGTAGAGTA 155914 Query 116121 TGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG-AGGGCTGCGTGATACATTGTCT 116179 ||||| | | | |||| || || | || ||||| ||||| || || |||| Sbjct 155913 GGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTGTCAGGGCAGCGTGGTAAATGGTCT 155855 Query 116180 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAA-A 116238 | ||||| | || | | ||||||| || || || | | || || | | Sbjct 155854 CGAAAATTTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCG-CAGAGCA 155796 Query 116239 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 116298 | ||| | || || ||||| || ||||| | || || || ||||||| ||| || Sbjct 155795 AGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCTG 155736 Query 116299 TTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 116358 || ||||| ||| | ||| ||| || |||||| | | | || || || | | Sbjct 155735 TTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCGATGATCTTGTTGAGGTTACGGACG 155676 Query 116359 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT-GAC 116417 || || | || | || || ||||| | | | || | | || ||| | | | ||| Sbjct 155675 ACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCT-TCTTTGTAGTCGAC 155617 Query 116418 ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTA 116477 | ||| ||||| | || |||| || || |||| |||||| || ||| Sbjct 155616 GAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTA 155557 Query 116478 CTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGA 116537 ||| || || ||||| |||| ||| || || |||||| |||| || || || || Sbjct 155556 CTCAATGATCTCCGTGCACAGATTAGAGCTGCGAATGGTTCCCAGATTTTTCTGGTTGCT 155497 Query 116538 CTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTT 116597 ||| |||| || ||||| ||||| |||||| | || | ||||| || || |||| || Sbjct 155496 CTTCCTGTTGCAGGCATCTTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGCCTC 155437 Query 116598 GAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCT 116656 ||| || | | ||| | | || | ||| | | ||| | | | || ||||| || Sbjct 155436 GAGGATGGAGTACCAGAGCTTCTG-GGCACGAATAGTCTTGCGGCCACGGCCCTCACGCT 155378 Query 116657 CGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCTGGTGCC 116715 | ||||| |||||| ||||||||||| || || | ||| || | || || || | Sbjct 155377 CATACTTCTCGTAGAGAGCCTCAAACTCCTCGCC-ATAGCAATCAGCCAGGCCAGGGCAC 155319 Query 116716 TTATCTGGACAGAAGAGAGACCATTGACCACCCTCCT--CAACCCGCTTCATGAAGAGGT 116773 | | ||||| | ||| | ||| | || | |||| | || ||||||||||| || | Sbjct 155318 TCGTTGGGACACATGAGGGTCCAAT--CCCCGTTCCTTTCGACGCGCTTCATGAAAAGAT 155261 Query 116774 CTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGA 116833 |||||||||| || || |||||| || ||| || |||||| | || || || Sbjct 155260 CTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCT 155201 Query 116834 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG 116893 ||||| || | |||||| | | || |||||||| || || ||||| | || | || Sbjct 155200 TTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATAGCAAATG 155141 Query 116894 -ACC-CCTTGC-GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAA 116950 ||| | || | || |||||| || || || || || ||| || ||||||| Sbjct 155140 CACCAGGTCGCTTATTGCCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGAA 155081 Query 116951 GCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTC 117010 |||| |||||||| || | ||| || || || || ||| ||| | |||| | Sbjct 155080 GCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTGGCAC 155021 Query 117011 TGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCG 117070 || ||||| || || || ||||| || ||| ||| ||||| || || | Sbjct 155020 GGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCT 154961 Query 117071 TGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCG 117130 ||||| || ||||||| || || || ||| |||| | | | ||||| ||| | Sbjct 154960 TGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCAACTAGGAAACAGGAAG 154901 Query 117131 ACATTTGTGGCCTT--GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACAT 117188 ||| || | || || ||||||||||||||||| || |||| |||||| ||| | Sbjct 154900 ACA--GCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGA--AG 154845 Query 117189 ACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATA 117246 | |||| |||||| | ||| |||||||| || |||| || || |||| Sbjct 154844 AGCTTGCTGGACATGAGGTGGTAAGTCTCCAAAACGCGTTCGATGTTGTCTCCCCAAATA 154785 Query 117247 CCGATTGAGACCCGCATAAACATGTATTGGGGT 117279 |||| | || ||||||| ||||| || ||| Sbjct 154784 CCGACCGCAACGCGCATAATCATGTGCTGAGGT 154752 >seq3 Length=584709 Score = 116 bits (128), Expect = 5e-21 Identities = 162/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| ||| ||| | |||||| ||||||||||| ||||| || |||||| || || Sbjct 295073 GCAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGGCCG 295132 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| ||||| |||||||| | ||||||||||| ||| | ||| ||||||||| Sbjct 295133 GGCATCAGACCACGCTTCTTGAGCCAGAAAATCGACGCAAAGGCACCACTGAAGAAGATG 295192 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGA--CTTTGT-ATCA 127696 ||||||||| ||||| || | | |||| ||| | ||| ||| | |||| | | Sbjct 295193 CCCTCCACAGCAGCGAAAGCCACCAAGCGCTGGGC---GAAGCTGGAATCCTTGTCCTGA 295249 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGAC 127740 | ||| || ||||| | ||| |||||| ||| || ||||| Sbjct 295250 ATCCAACGAATGGCCCAGTCTGCTTTTTTCCGGATGCAGGGGAC 295293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613487935873920