Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq36 111 3e-19 >seq36 Length=226857 Score = 111 bits (122), Expect = 3e-19 Identities = 438/676 (65%), Gaps = 10/676 (1%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATGCCGG 203900 || || |||||||| |||| || || | |||| ||||| | | || ||||||||||| | Sbjct 156515 TCTACGGTGAACTGGATGG-GTGCAGCAGCAG-CCTGCGTGCGCAAGTAGTACATGCCCG 156458 Query 203901 TCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGT 203960 |||| || ||| || ||| || | |||||| || | | |||| || | || | Sbjct 156457 TCTTGAGACCCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGAT 156398 Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCA 204020 | |||||||| ||| || |||||| |||||||| |||| | ||||| ||||||| Sbjct 156397 CCTTCATGTGAACGTTGAGCGACTGGGACTGGTCGATAAAAGCACCGCGATCGGCGGCCA 156338 Query 204021 TATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTT 204080 | | ||||| ||| ||||||||||| || |||||| | | | || ||| Sbjct 156337 TCTGGATAACATGACGCTGAGAAATCTCCCAAACAGTCTTGTAGAGAGCCTTGATGTCGG 156278 Query 204081 GAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTC 204139 || | || | | || ||| || || ||||| ||||| || | | || || | Sbjct 156277 CGGGGATAT-TGGGAATGTTCTGAATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATG 156219 Query 204140 TCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGA 204199 | || ||| | |||| || || ||| | || |||||||| || ||| Sbjct 156218 GCATCAGACCAAAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGG 156159 Query 204200 AAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCG 204259 || || || | || || | || | | | |||| ||| |||| || || ||| Sbjct 156158 AATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCA 156099 Query 204260 TTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTG 204319 ||||| || | || || | ||| ||| |||||||||||||| || |||| |||||| Sbjct 156098 TTGTTACCCAGGATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTG 156039 Query 204320 CGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGT-CCAGTCGTGCATCGCACTGG 204377 || | ||||| | | || |||| ||||| || || ||| || || | || | Sbjct 156038 CGAATACCGTGCTGCTTGA-TCTGCTCCTTCA-AGTTGTCCCACTCCCACAACTCAGAAG 155981 Query 204378 GTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACG 204437 | || || ||||||||||||||||| | |||| | | || ||||||| | | Sbjct 155980 GCTTGACATTCCACATGTCGAACTGAAGAACACCTTCCGAGGCGGGAGAGCCCTTGAAGG 155921 Query 204438 TCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACA 204497 | | || || | ||||| ||||||| ||||| | || ||| | ||| | Sbjct 155920 TAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTCAGGGCAGCGTGGTAAA 155861 Query 204498 TGGTCTCAAAGATCTG 204513 ||||||| || || || Sbjct 155860 TGGTCTCGAAAATTTG 155845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795130232126720