Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq5 123 6e-23 seq9 114 3e-20 >seq5 Length=531522 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||| || | ||| || || |||||| |||| ||||||||| || || Sbjct 177122 CGAAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTG 177181 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || || |||||||| || ||||||||||| ||| || Sbjct 177182 CGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGTTGCTGGTCCGGGGGAATGCCC 177241 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| |||||| | | || || || | Sbjct 177242 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGG 177301 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| |||||||| ||||| || ||||| || Sbjct 177302 GTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTG 177339 >seq9 Length=455495 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| | || ||||| |||||||| || | |||||||| | |||||| Sbjct 294770 CGCAGACGCAGGACTAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTT 294711 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || || |||||||| ||||||||||| || ||| ||| Sbjct 294710 CGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCT 294651 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||| || |||| || || | | ||| || ||||| Sbjct 294650 TCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAGGATTCAACTTCCAAT 294591 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || | ||| || || || || || Sbjct 294590 GTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTG 294553 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | || || ||||| || || |||||||| || | |||||| |||| | ||| Sbjct 294242 TCGAAGGCGGAGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGT 294183 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || || || ||||||||||| |||||||| |||||||||||||| || ||||| Sbjct 294182 GCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGGATTCC 294123 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||||||||| ||| || || | || || | | || || || | Sbjct 294122 TTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATAGTATCAGACGACTCGACCTCGAG 294063 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || || || || ||||| Sbjct 294062 AGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTG 294024 Score = 100 bits (110), Expect = 7e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 199439 TCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||| ||||||||| || || | || |||||||||||||||||||| || Sbjct 294968 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAA 294909 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 || || || |||||||| ||| || || || ||||||||||| || || Sbjct 294908 ATAAGTCGTTGCTGGTCAGGAGGGATACCCTCCTTATCCTGAATCTTAGATTTGACATTG 294849 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 |||| ||| || | | ||| || ||||| || || ||||| || || | || || ||| Sbjct 294848 TCGATGGTATCAGAAGATTCGACTTCCAAGGTAATAGTCTTTCCAGTCAAGGTCTTGACA 294789 Query 199619 AAAATTTG 199626 |||||||| Sbjct 294788 AAAATTTG 294781 Score = 98.7 bits (108), Expect = 2e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || || ||||| |||| |||||||| | | || | |||||| Sbjct 294533 AGGACGAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCT 294474 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || ||||| || | |||||||| || ||| || || || ||| Sbjct 294473 TCCAGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTATCC 294414 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| |||||| | | || || || | ||||| ||| Sbjct 294413 TGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTC 294354 Query 199598 TTACCCGTGAGAGTTTTCACAA 199619 || || || | ||| || |||| Sbjct 294353 TTTCCGGTCAAAGTCTTGACAA 294332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178883656408304